External Email - Use Caution
Hi. I'm trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP -FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1) Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2) cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3) uname -a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log attached
Thanks!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
External Email - Use Caution
Hi, sorry for sending this message again, but I never got a response.
Thanks for any advice on how to fix this issue.
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Mark Wagshul Sent: Thursday, May 20, 2021 4:33 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] recon-all errors
CAUTION: This email comes from an external source; the attachments and/or links may compromise our secure environment. Do not open or click on suspicious emails. Please click on the “Phish Alert” button on the top right of the Outlook dashboard to report any suspicious emails.
External Email - Use Caution Hi. I’m trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP –FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1) Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2) cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspurmailto:root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3) uname –a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log attached
Thanks!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
Can you check the registration of the FLAIR and T1? cd subject/mri tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz
On 5/20/2021 4:33 PM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution
Hi. I’m trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP –FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1)Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2)cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3)uname –a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4)recon-all.log attached
Thanks!
Mark
Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011
FAX: 718-430-3399
Email:_mark.wagshul@einsteinmed.org mailto:mark.wagshul@einsteinmed.org_
einstein-logo-rgb
This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2l...
External Email - Use Caution
Thanks. I've never used this command before to register the FLAIR, but I'm getting the following error:
[mwagshul@loginnode2 mri]$ tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz cd /gs/gsfs0/users/mrrc-all/PROJECTS/HOLTZER/MSAGING/MS_PROCESSING/2019-10049-044/mri freeview -transform-volume -viewport cor -v orig.mgz:visible=1:name=orig.mgz(targ) /gs/gsfs0/users/mrrc-all/PROJECTS/HOLTZER/MSAGING/MS_PROCESSING/2019-10049-044/mri/orig/FLAIRraw.mgz:name=FLAIRraw.mgz(mov):reg=/gs/gsfs0/users/mrrc-all/PROJECTS/HOLTZER/MSAGING/MS_PROCESSING/2019-10049-044/mri/transforms/FLAIRraw.lta /public/apps/freesurfer/7.1.0/bin/fsvglrun: line 20: conditional binary operator expected /public/apps/freesurfer/7.1.0/bin/fsvglrun: line 20: syntax error near `FS_ALLOW_VGLRUN' /public/apps/freesurfer/7.1.0/bin/fsvglrun: line 20: `if [[ ! -v FS_ALLOW_VGLRUN ]]; then' [mwagshul@loginnode2 mri]$
Thanks for any advice on the issue here.
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Thursday, May 27, 2021 6:13 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all errors
Can you check the registration of the FLAIR and T1? cd subject/mri tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz
On 5/20/2021 4:33 PM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution Hi. I'm trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP -FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1. Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2. cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspurmailto:root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3. uname -a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4. recon-all.log attached
Thanks!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2l...https://secure-web.cisco.com/1uodFcWge5D7CiXVGF76MUxbUdhgVkjEXRSm2A6hHtdB8SeclT8I1DnipEjD5N5xkDVmpFdX4aRkpwTIEB5KehFnabUNb0d0_Bo2qhEm8v88f_5ODScYkfwmKTW4UHJyt7ZCaUXX6KxURh7cOZjIv4IQyjXRizb6oYI9rtMui3fIH67OVzRrIWVQHGdUOUg_3Po_2l2xJcXHCIktrFNQ08W7rr-NiYOKl7BD9U4LCLXUiLsj3-Ny1FVazZZzZF8odUcBTpAVoBzuNX-o2iMj92Q/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2lpM9gyRBF5Ovqeo_qLOcNE2LGLyAJP8LOx9XU7i517xPCEWkBClm2AuPJVUdMJ5hVXXKN5NYIoSAgb4E3VEtYbkmECZNi-O7Guk1WFmS9hELFojyd6s-fho0BkPGuEQd3zr2LxuSgJww3YRjaISg5s1v123K-TMaFDP1JiG1jc4_mj3S0CHJaQE0UYJ6wioN5jQHl2f1ndyzkbshFrwfXnQs9sjwYCzFddFUKnt7g%252Fhttps%25253A%25252F%25252Fmail.nmr.mgh.harvard.edu%25252Fmailman%25252Flistinfo%25252Ffreesurfer%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257C6bb22b2e969446c2f20e08d9215c9cbc%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637577503918609620%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DvdFzL2nl1GOSCcHMWcxmgbltlXp1ZqeGLNMcnzMiRHk%253D%26reserved%3D0
External Email - Use Caution
It works fine in 6.0, was in 7.1. The registration looks fine (the FLAIR is brain extracted, while the orig.mgz is not, is this expected, or was that my error, I don't recall which FLAIR image I fed in).
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Thursday, May 27, 2021 6:13 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all errors
Can you check the registration of the FLAIR and T1? cd subject/mri tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz
On 5/20/2021 4:33 PM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution Hi. I'm trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP -FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1. Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2. cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspurmailto:root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3. uname -a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4. recon-all.log attached
Thanks!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2l...https://secure-web.cisco.com/1tspEfj7-Hpjd3VybY_f2pHHXH4Uhmqbfq4U2szlQ89XMdf7Dq59VccLpil3h6qr1JrdVTRT_pIAy4og_twvbu5XcW3zBTqhFX0yEfpZweGAUi-KM9QhrDEvQ_xJn49Zs441yUQaMcF1WR9JGtmUBeR0QKXnRmkA2L7tUr1Eyj7TrQFYA_29-57SIaV3K99NKVN0qJVYevUyWX12-s6P5S-uUPJekwqF9aA9gRynMyYRn55vZ-AS_0-oD9h3chEq4E-JdkcdRHMU3Ns_imLWT5w/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2lpM9gyRBF5Ovqeo_qLOcNE2LGLyAJP8LOx9XU7i517xPCEWkBClm2AuPJVUdMJ5hVXXKN5NYIoSAgb4E3VEtYbkmECZNi-O7Guk1WFmS9hELFojyd6s-fho0BkPGuEQd3zr2LxuSgJww3YRjaISg5s1v123K-TMaFDP1JiG1jc4_mj3S0CHJaQE0UYJ6wioN5jQHl2f1ndyzkbshFrwfXnQs9sjwYCzFddFUKnt7g%252Fhttps%25253A%25252F%25252Fmail.nmr.mgh.harvard.edu%25252Fmailman%25252Flistinfo%25252Ffreesurfer%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257C6bb22b2e969446c2f20e08d9215c9cbc%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637577503918609620%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DvdFzL2nl1GOSCcHMWcxmgbltlXp1ZqeGLNMcnzMiRHk%253D%26reserved%3D0
OK, I'll have to take a look at the data. Someone will be in touch about getting it.
On 6/1/2021 11:02 AM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution
It works fine in 6.0, was in 7.1. The registration looks fine (the FLAIR is brain extracted, while the orig.mgz is not, is this expected, or was that my error, I don’t recall which FLAIR image I fed in).
Mark
Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011
FAX: 718-430-3399
Email:_mark.wagshul@einsteinmed.org mailto:mark.wagshul@einsteinmed.org_
einstein-logo-rgb
This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
*From:*freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Douglas N. Greve *Sent:* Thursday, May 27, 2021 6:13 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] recon-all errors
Can you check the registration of the FLAIR and T1? cd subject/mri tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz
On 5/20/2021 4:33 PM, Mark Wagshul wrote:
* External Email - Use Caution * * External Email - Use Caution * Hi. I’m trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface. recon-all -s 2019-10049-045-SP –FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all 1.Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c 2.cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur <mailto:root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur>) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017 3.uname –a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux 4.recon-all.log attached Thanks! Mark ____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461 Ph: 718-430-4011 FAX: 718-430-3399 Email:_mark.wagshul@einsteinmed.org <mailto:mark.wagshul@einsteinmed.org>_ einstein-logo-rgb This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://secure-web.cisco.com/1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2lpM9gyRBF5Ovqeo_qLOcNE2LGLyAJP8LOx9XU7i517xPCEWkBClm2AuPJVUdMJ5hVXXKN5NYIoSAgb4E3VEtYbkmECZNi-O7Guk1WFmS9hELFojyd6s-fho0BkPGuEQd3zr2LxuSgJww3YRjaISg5s1v123K-TMaFDP1JiG1jc4_mj3S0CHJaQE0UYJ6wioN5jQHl2f1ndyzkbshFrwfXnQs9sjwYCzFddFUKnt7g/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer <https://secure-web.cisco.com/1tspEfj7-Hpjd3VybY_f2pHHXH4Uhmqbfq4U2szlQ89XMdf7Dq59VccLpil3h6qr1JrdVTRT_pIAy4og_twvbu5XcW3zBTqhFX0yEfpZweGAUi-KM9QhrDEvQ_xJn49Zs441yUQaMcF1WR9JGtmUBeR0QKXnRmkA2L7tUr1Eyj7TrQFYA_29-57SIaV3K99NKVN0qJVYevUyWX12-s6P5S-uUPJekwqF9aA9gRynMyYRn55vZ-AS_0-oD9h3chEq4E-JdkcdRHMU3Ns_imLWT5w/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2lpM9gyRBF5Ovqeo_qLOcNE2LGLyAJP8LOx9XU7i517xPCEWkBClm2AuPJVUdMJ5hVXXKN5NYIoSAgb4E3VEtYbkmECZNi-O7Guk1WFmS9hELFojyd6s-fho0BkPGuEQd3zr2LxuSgJww3YRjaISg5s1v123K-TMaFDP1JiG1jc4_mj3S0CHJaQE0UYJ6wioN5jQHl2f1ndyzkbshFrwfXnQs9sjwYCzFddFUKnt7g%252Fhttps%25253A%25252F%25252Fmail.nmr.mgh.harvard.edu%25252Fmailman%25252Flistinfo%25252Ffreesurfer%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257C6bb22b2e969446c2f20e08d9215c9cbc%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637577503918609620%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DvdFzL2nl1GOSCcHMWcxmgbltlXp1ZqeGLNMcnzMiRHk%253D%26reserved%3D0>
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1ucxeQYS68-2vGG3TlU2NsAjIdtUpFT30cVUdCcfUHG3Mdv...
External Email - Use Caution
Doug,
Thanks. The one thing I thought of - the FLAIR data were hi-res 3D FLAIR which have a pretty long T2 and not great grey/white contrast (it's an MS project, so mostly acquired for quantifying lesion load). Not sure if this would affect the calculations. I tried playing around with the T2_min/max_inside/outside parameter going into mris_place_surface, but that didn't seem to help. One more thing. I don't see this in the recon-all.log file, but when I try to individually run mris_place_surface, it quits with a segmentation fault. Not sure if that helps, or why this error wouldn't show up in the log file.
Thanks for the help!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Tuesday, June 1, 2021 6:02 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all errors
OK, I'll have to take a look at the data. Someone will be in touch about getting it.
On 6/1/2021 11:02 AM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution It works fine in 6.0, was in 7.1. The registration looks fine (the FLAIR is brain extracted, while the orig.mgz is not, is this expected, or was that my error, I don't recall which FLAIR image I fed in).
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Thursday, May 27, 2021 6:13 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all errors
Can you check the registration of the FLAIR and T1? cd subject/mri tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz
On 5/20/2021 4:33 PM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution Hi. I'm trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP -FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1. Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2. cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspurmailto:root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3. uname -a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4. recon-all.log attached
Thanks!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2l...https://secure-web.cisco.com/1bvKd2BD2KKwdz630qMeHfXGI-cqu1JslYZZ5rqvY9DtCirhAWXg_2w_qzHY-IAcexTMKnqdUGAO6rPQuPyh7lqggfwSWKnpO-WY8SOAKkqhIiqa4azbeD1K_vDHJoyoKBjJ9JolOnlaeqAmphGx4wuxujuuHWZN1aXjbK6jrU8fA9QOV8rimXkMqh92_Ng2QPxrxFsj1xYE0Ei7c1o1r_ZWJcfOR2n8qqIi4CO79ioE/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1tspEfj7-Hpjd3VybY_f2pHHXH4Uhmqbfq4U2szlQ89XMdf7Dq59VccLpil3h6qr1JrdVTRT_pIAy4og_twvbu5XcW3zBTqhFX0yEfpZweGAUi-KM9QhrDEvQ_xJn49Zs441yUQaMcF1WR9JGtmUBeR0QKXnRmkA2L7tUr1Eyj7TrQFYA_29-57SIaV3K99NKVN0qJVYevUyWX12-s6P5S-uUPJekwqF9aA9gRynMyYRn55vZ-AS_0-oD9h3chEq4E-JdkcdRHMU3Ns_imLWT5w%252Fhttps%25253A%25252F%25252Fnam04.safelinks.protection.outlook.com%25252F%25253Furl%25253Dhttps%2525253A%2525252F%2525252Fsecure-web.cisco.com%2525252F1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2lpM9gyRBF5Ovqeo_qLOcNE2LGLyAJP8LOx9XU7i517xPCEWkBClm2AuPJVUdMJ5hVXXKN5NYIoSAgb4E3VEtYbkmECZNi-O7Guk1WFmS9hELFojyd6s-fho0BkPGuEQd3zr2LxuSgJww3YRjaISg5s1v123K-TMaFDP1JiG1jc4_mj3S0CHJaQE0UYJ6wioN5jQHl2f1ndyzkbshFrwfXnQs9sjwYCzFddFUKnt7g%2525252Fhttps%252525253A%252525252F%252525252Fmail.nmr.mgh.harvard.edu%252525252Fmailman%252525252Flistinfo%252525252Ffreesurfer%252526data%25253D04%2525257C01%2525257CMark.wagshul%25252540einsteinmed.org%2525257C6bb22b2e969446c2f20e08d9215c9cbc%2525257C9c01f0fd65e040c089a82dfd51e62025%2525257C0%2525257C0%2525257C637577503918609620%2525257CUnknown%2525257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%2525253D%2525257C1000%252526sdata%25253DvdFzL2nl1GOSCcHMWcxmgbltlXp1ZqeGLNMcnzMiRHk%2525253D%252526reserved%25253D0%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257Cc2998c54de1d4570470208d92548f005%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637581817508523977%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DdnZMgW5zerEte4cioOKEJPrehs72nnY%252FgyXaSLYFWZY%253D%26reserved%3D0
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1ucxeQYS68-2vGG3TlU2NsAjIdtUpFT30cVUdCcfUHG3Mdv...https://secure-web.cisco.com/1uYz8cZmGQRcZMxNnt44tOvBeTvaI7SoTwxkTXEodPVxlF7RPrUKMkPRqyydj4D5L_U9ydHB99bJ-RxWI6ZW3298XlYsWIul57Iie34qM0O4JBIsUv_qMXTj4gRGupr3x5Uw7s4MRw9mJhq6Kd-yw5RmXHYupyVkXpbqijZgFxZRgz3fyPvVsnXNOK_8avS3wonxi1evilVgaoL_dPU7SdxC6ljsEaD0pdzzd19lx4bjMlG-YkQZpadO2v8a9GlsKjZ9AGgHyDnq4puOnPAqb9g/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1ucxeQYS68-2vGG3TlU2NsAjIdtUpFT30cVUdCcfUHG3Mdvf7_4Lzvg9eNvE0ydHVtdDzd1NjAvJS2Y49YFyViFmweOH4R8sjIX9T_xVdw6yCruNa_3YUSLs5RDqSEBqLYQ6eat1gksfd2Q7cw-KIvXYdPxqGLQRoWVciBEc_sDwI81Q0KiVJB-c04Z1nHJsxhQZTabdafhQa6M-NerIrQu8iwRmXzhRo0bizUb7-VTtSRBpmcdYGn_oYUa1XaAsgznc5mORPVSSLLOz5RAUPFQ%252Fhttps%25253A%25252F%25252Fmail.nmr.mgh.harvard.edu%25252Fmailman%25252Flistinfo%25252Ffreesurfer%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257Cc2998c54de1d4570470208d92548f005%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637581817508533936%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DkLBnQDS3Ez%252BgIA7%252F4fzqMtzwIRyJ1a9nNM0yc1XHl%252FU%253D%26reserved%3D0
External Email - Use Caution
Doug,
Following up on this. Where can I upload the data for you to take a look? Thanks,
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Tuesday, June 1, 2021 6:02 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all errors
OK, I'll have to take a look at the data. Someone will be in touch about getting it.
On 6/1/2021 11:02 AM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution It works fine in 6.0, was in 7.1. The registration looks fine (the FLAIR is brain extracted, while the orig.mgz is not, is this expected, or was that my error, I don't recall which FLAIR image I fed in).
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Thursday, May 27, 2021 6:13 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all errors
Can you check the registration of the FLAIR and T1? cd subject/mri tkregisterfv --mov orig/FLAIRraw.mgz --reg transforms/FLAIRraw.lta --targ orig.mgz
On 5/20/2021 4:33 PM, Mark Wagshul wrote:
External Email - Use Caution
External Email - Use Caution Hi. I'm trying to run recon-all, with T1 and FLAIR images and running into errors, which seem to be associated with the FLAIR refinement of the pial surface.
recon-all -s 2019-10049-045-SP -FLAIR 2019-10049-045-SP/VISIT_1/RAW/105_3D_FLAIR_SAGBrain.nii.gz -FLAIRpial -all
1. Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2. cat /proc/version: Linux version 2.6.32-696.6.3.el6.694g0000.x86_64 (root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspurmailto:root@-home-lgu-olaf-RHEL-6ES-9-x86_64.larkspur) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Wed Jul 12 02:19:57 UTC 2017
3. uname -a: Linux loginnode2 2.6.32-696.6.3.el6.694g0000.x86_64 #1 SMP Wed Jul 12 02:19:57 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
4. recon-all.log attached
Thanks!
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.orgmailto:mark.wagshul@einsteinmed.org
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2l...https://secure-web.cisco.com/1kVqPY0U9PmZTmg_H1BTNugtXM5R1CAx2P_XmVycUAPm-m5sgE_u5AsYQgxcdXUNcmQeSvDu75WOskDUCPCa1_ljWJNAvmLHxAehVa05fmzmKsArjaIssD-6XRQPT6nYEsU9YWB_rtaJjuk3pSdLI84LBdgsihslK6aMYGAeH8WF9oKgwaSyM1To4Db1gxwleUyh6NjkIo-FZhOqL6-EYTAD4Bm7RTqZmzGzGpA7MnOE/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1tspEfj7-Hpjd3VybY_f2pHHXH4Uhmqbfq4U2szlQ89XMdf7Dq59VccLpil3h6qr1JrdVTRT_pIAy4og_twvbu5XcW3zBTqhFX0yEfpZweGAUi-KM9QhrDEvQ_xJn49Zs441yUQaMcF1WR9JGtmUBeR0QKXnRmkA2L7tUr1Eyj7TrQFYA_29-57SIaV3K99NKVN0qJVYevUyWX12-s6P5S-uUPJekwqF9aA9gRynMyYRn55vZ-AS_0-oD9h3chEq4E-JdkcdRHMU3Ns_imLWT5w%252Fhttps%25253A%25252F%25252Fnam04.safelinks.protection.outlook.com%25252F%25253Furl%25253Dhttps%2525253A%2525252F%2525252Fsecure-web.cisco.com%2525252F1FmyFbwTRNmR52lSeebeXqP5AQrT8BICIeBvN4vLgUbyu2lpM9gyRBF5Ovqeo_qLOcNE2LGLyAJP8LOx9XU7i517xPCEWkBClm2AuPJVUdMJ5hVXXKN5NYIoSAgb4E3VEtYbkmECZNi-O7Guk1WFmS9hELFojyd6s-fho0BkPGuEQd3zr2LxuSgJww3YRjaISg5s1v123K-TMaFDP1JiG1jc4_mj3S0CHJaQE0UYJ6wioN5jQHl2f1ndyzkbshFrwfXnQs9sjwYCzFddFUKnt7g%2525252Fhttps%252525253A%252525252F%252525252Fmail.nmr.mgh.harvard.edu%252525252Fmailman%252525252Flistinfo%252525252Ffreesurfer%252526data%25253D04%2525257C01%2525257CMark.wagshul%25252540einsteinmed.org%2525257C6bb22b2e969446c2f20e08d9215c9cbc%2525257C9c01f0fd65e040c089a82dfd51e62025%2525257C0%2525257C0%2525257C637577503918609620%2525257CUnknown%2525257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%2525253D%2525257C1000%252526sdata%25253DvdFzL2nl1GOSCcHMWcxmgbltlXp1ZqeGLNMcnzMiRHk%2525253D%252526reserved%25253D0%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257Cc2998c54de1d4570470208d92548f005%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637581817508523977%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DdnZMgW5zerEte4cioOKEJPrehs72nnY%252FgyXaSLYFWZY%253D%26reserved%3D0
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://secure-web.cisco.com/1ucxeQYS68-2vGG3TlU2NsAjIdtUpFT30cVUdCcfUHG3Mdv...https://secure-web.cisco.com/1_35u6r9YmJuaEpVb0flIxmW0ExGj3Q6psPfmLFpMZ7N8PxPx3Lm3XxTo_TWGzUtzqHsN7iFiXHjIwLFwKDTwcGOfwUg3aADTE45MSEjqPCLyB-8UlRO7J8gkNKICLUf1BEMoPFxD3tnf_M-JoV6DWTc-b8fEdlUvZXbBbQlYa_Eq_FbWzpkRif4hkafuPe0gy1L-dde_X00VCDclnHpgeKXM3Ceg5c0diIQQbYgMoNUi7GD8i5aJuz9Y3299MP6-WDjFRAiubfSiF7dvzFu40Q/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsecure-web.cisco.com%252F1ucxeQYS68-2vGG3TlU2NsAjIdtUpFT30cVUdCcfUHG3Mdvf7_4Lzvg9eNvE0ydHVtdDzd1NjAvJS2Y49YFyViFmweOH4R8sjIX9T_xVdw6yCruNa_3YUSLs5RDqSEBqLYQ6eat1gksfd2Q7cw-KIvXYdPxqGLQRoWVciBEc_sDwI81Q0KiVJB-c04Z1nHJsxhQZTabdafhQa6M-NerIrQu8iwRmXzhRo0bizUb7-VTtSRBpmcdYGn_oYUa1XaAsgznc5mORPVSSLLOz5RAUPFQ%252Fhttps%25253A%25252F%25252Fmail.nmr.mgh.harvard.edu%25252Fmailman%25252Flistinfo%25252Ffreesurfer%26data%3D04%257C01%257CMark.wagshul%2540einsteinmed.org%257Cc2998c54de1d4570470208d92548f005%257C9c01f0fd65e040c089a82dfd51e62025%257C0%257C0%257C637581817508533936%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DkLBnQDS3Ez%252BgIA7%252F4fzqMtzwIRyJ1a9nNM0yc1XHl%252FU%253D%26reserved%3D0
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
Mark Wagshul