Thanks a lot for your reply. Also, my apologies about giving you a hard time. Again, thanks for the reply.

Best regards, DaWoon

2016. 11. 15. 오전 12:54, Douglas N Greve greve@nmr.mgh.harvard.edu 작성:

Hi, we do not support a tool to do this, sorry. I think you can do it in FSL with fslswapdim. Try contacting the FSL list

On 11/14/2016 07:52 AM, DaWoon Heo wrote:

...

Dear Freesurfer experts,

I would like to use the ‘mir_convert --out_orientation LAS’ to change the orientation of my data (i.e. fMRI T1 data). From several materials, I could find it is not a good idea to change the orientation. However, to improve the efficacy of ‘bet’, it seems converting the orientation is necessary. The problem is, when I use ‘mir_convert --out_orientation LAS’, I could find some top of the skull and brain areas were severed. Thus, may I ask you for an advice to solve this problem? Many thanks in advance.

Best regards, DaWoon _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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