Hi all, One of my subject exited with error after 5 days of processing. This is what it said, CORRECTING DEFECT 57 (vertices=101022, convex hull=10822) Excessive topologic defect encountered: could not allocate 536232126 edges for retessellation Cannot allocate memory Darwin chikkus-MacBook-Pro.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
recon-all -s onco4 exited with ERRORS at Fri Feb 15 12:17:05 CET 2013
My question is this much edges normal and how much memory i need allocate to process this.
Many Thanks Chikku
Hi Chikku That is a giant defect - almost the size of an entire hemi. Something is badly wrong. Check the aseg and filled volumes to see what's going on, and the ?h.orig.nofix Bruce
On Feb 21, 2013, at 5:35 AM, Varghese Chikku chikkuv@tcd.ie wrote:
Hi all, One of my subject exited with error after 5 days of processing. This is what it said, CORRECTING DEFECT 57 (vertices=101022, convex hull=10822) Excessive topologic defect encountered: could not allocate 536232126 edges for retessellation Cannot allocate memory Darwin chikkus-MacBook-Pro.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
recon-all -s onco4 exited with ERRORS at Fri Feb 15 12:17:05 CET 2013
My question is this much edges normal and how much memory i need allocate to process this.
Many Thanks Chikku _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bruce Fischl -
Varghese Chikku