External Email - Use Caution
If you are getting an “illegal instruction” error running Freesurfer on Linux, then the hardware (CPU’s) do not have those instructions available in their instruction set to execute. As far as I know that error only happens with Freesurfer binaries compiled with AVX instructions. So either you are running on new ARM based processors or you are running on older Intel processors (approx. pre-2011) that do not implement AVX. There is a list of Intel processors supporting AVX instructions at https://secure-web.cisco.com/1uW45KoTvgWNrFJTk9Lu8MiuKA56yspFlAr2_SBqEvMsfNP...; For Linux machines, the resolution is to run use Intel processors that can execute those instructions. - R.
On Sep 12, 2023, at 16:27, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote: External Email - Use Caution what problem? There is nothing else in your email and I don't have the previous threads.On 9/12/2023 10:51 AM, Glass, John wrote: External Email - Use Caution Hello, I am running into the exact same problem at my local site running version 7.4.1 on a centos 7 machine with a build stamp of: freesurfer-linux-centos7_x86_64-7.4.1-20230613-7eb8460. Has this issue been resolved? Thank you, John O. Glass, M.S.Signal Processing SupervisorDepartment of Diagnostic ImagingSt. Jude Children's Research Hospital262 Danny Thomas Place, Mail Stop 220Memphis, TN 38105-3678john.glass@stjude.org(901) 595-3276MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1zIIZtAoXKf8myf-KWBMwne7yPoUAd7Qy1jEcPWcJAC65Fhx... Disclaimer: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1Q1uNU-pDdKZt3c2gJvRAX-e_HCj8f2TfRXbDL5fcJrkTQwg... Disclaimer: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1YLtpOgLUGV6rBo4lpwcQb-p3mwycbu6cy2hqQtfJsNyU6su... Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1banHDx6NgdG-lM1NRwrxZmZ6Z41zC38nEpucEeSW4wG4kp... mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
This Linux Box uses a pre-2011 AMD chip that does not support the AVX instructions as verified through /proc/cpuinfo and lscpu.
Thank you for responding to my inquiry and completing the loop on the email archive to document this as the source of the error.
Thanks,
John
From: fsbuild fsbuild@contbay.com Sent: Tuesday, September 12, 2023 3:46 PM To: freesurfer@nmr.mgh.harvard.edu Cc: Glass, John John.Glass@STJUDE.ORG Subject: Re: [Freesurfer] ScLimbic issue
Caution: External Sender. Do not open unless you know the content is safe.
If you are getting an "illegal instruction" error running Freesurfer on Linux, then the hardware (CPU's) do not have those instructions available in their instruction set to execute. As far as I know that error only happens with Freesurfer binaries compiled with AVX instructions. So either you are running on new ARM based processors or you are running on older Intel processors (approx. pre-2011) that do not implement AVX. There is a list of Intel processors supporting AVX instructions at https://secure-web.cisco.com/1yWGvDh6--hjHen7b9AVAcGCXfEc0PhD9Hf6aC104qyYQlM... For Linux machines, the resolution is to run use Intel processors that can execute those instructions.
- R.
On Sep 12, 2023, at 16:27, Douglas N. Greve <dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu> wrote:
External Email - Use Caution
what problem? There is nothing else in your email and I don't have the previous threads. On 9/12/2023 10:51 AM, Glass, John wrote: External Email - Use Caution Hello,
I am running into the exact same problem at my local site running version 7.4.1 on a centos 7 machine with a build stamp of: freesurfer-linux-centos7_x86_64-7.4.1-20230613-7eb8460.
Has this issue been resolved?
Thank you,
John O. Glass, M.S. Signal Processing Supervisor Department of Diagnostic Imaging St. Jude Children's Research Hospital 262 Danny Thomas Place, Mail Stop 220 Memphis, TN 38105-3678 john.glass@stjude.orgmailto:john.glass@stjude.org (901) 595-3276 MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/15fRQZCo9t9PU4xpcmebRuE_TtvQ6Ddzz32Y6nfrnEC6PuXC...http://secure-web.cisco.com/1BpeOmGNdiCKRYBgOZ6T6GstDeTtB_1HTpS5klyKFrwc5_QT5x-OSv6g8MrGQVGEJLgScn_UceznCun7I4LzGKd-CjRk8zPjfUTD6o433Bh9BFUTYJekZJpvqLAJiTEUcRYYxFjksXScrf-JWAyTDsni780r2-hDOy4dZHjRhxGk6CS3DmjszaD0EM3vOzAII9D24krgXPOBLFr7WlM976B7KCuqlVwtnnmnaAw0mp5aFwyiZXUYHXzJIce1ejHrkuxj3whS_L2tExVCVsg1WVxjZUERsd0TTxdmXbFeJga57xiNZs2c8MTzXkuJAEfiOIuWByLZN4bPLaJd-9ufJ3Q/http%3A%2F%2Fwww.stjude.org%2F
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Glass, John