The command line arguments for creating the base subject in Freesurfer Ver. 4.4 longitudinal stream do not agree between the Wiki and recon-all --help.
On the Wiki support page, 2. create the base template and process it cross sectionally:
recon-all -base <baseid> -tp <tp1id> -tp <tp2id> ... -all
From recon-all --help
2) create base subject and cross-sectionally process:
recon-all -base longbase -base-tp tp1 -base-tp tp2 -all
Is the correct argument "-tp" or is it "-base-tp"
Thanks for the software and support,
Kevin
I looked at the revision history of the wiki and it shows a change to "-tp" so I believe that is the correct one to use. However, I was able to run both versions without error. When Nick returns, he can confirm but I think you should be fine using -tp. Allison
either can be used. -tp is just short for -base-tp
On Fri, 2009-06-19 at 10:27 -0500, Dabbs (Kevin) wrote:
The command line arguments for creating the base subject in Freesurfer Ver. 4.4 longitudinal stream do not agree between the Wiki and recon- all --help.
On the Wiki support page, 2. create the base template and process it cross sectionally:
recon-all -base <baseid> -tp <tp1id> -tp <tp2id> ... -all
From recon-all --help
- create base subject and cross-sectionally process:
recon-all -base longbase -base-tp tp1 -base-tp tp2 -all
Is the correct argument "-tp" or is it "-base-tp"
Thanks for the software and support,
Kevin
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Nick Schmansky