Hi Stefano - What are the contents of the bedpostX output directory? In your case, that'd be this directory: /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX

a.y

On Mon, 11 Feb 2013, stdp82@virgilio.it wrote:

Hi list, I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error:

Loading mask from /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX niiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz

From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html%C2%... I'm deducing that the error may be related trace-all upload.

I have doing this upload but I visualize always the same error.

I attached tract-all uploades file that live in /Applications/freesurfer/bin.

Please, could you check it?

I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In this way, could I directly run in FSL dmri folder? Do you think that I should rename some files?

Thanks,

Stefano