Dear Freesurfer experts,
I was trying to run some longitudinal analysis but whenever I want to use the commands “long_mris_slopes” or “long_qdec_table” I just get “command not found” as an answer. When I try to look up a package that might include the command, by typing “cnf long_mris_slopes”, I also just get “command not found” as an answer. We are currently using version v 1.313.2.6.
Does anyone of you know if the two commands that I would like to run, are included in this version? Where would I have to look for the additional package if it exists? Or am I by any chance just typing the commands incorrect?
Many thanks for the help!
Sincerely yours
Peter
Hi Peter,
can you run any free surfer command at all? Looks to me that you did not source free surfer. What happens if you type freesurfer into the terminal window? It should print the version.
Best, Martin
On Jun 20, 2013, at 5:17 AM, Peter Bohn bohn-peter@gmx.de wrote:
Dear Freesurfer experts,
I was trying to run some longitudinal analysis but whenever I want to use the commands “long_mris_slopes” or “long_qdec_table” I just get “command not found” as an answer. When I try to look up a package that might include the command, by typing “cnf long_mris_slopes”, I also just get “command not found” as an answer. We are currently using version v 1.313.2.6.
Does anyone of you know if the two commands that I would like to run, are included in this version? Where would I have to look for the additional package if it exists? Or am I by any chance just typing the commands incorrect?
Many thanks for the help!
Sincerely yours
Peter _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--------------------------------- Dr. Martin Reuter Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT
A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129
Phone: +1-617-724-5652 Email: mreuter@nmr.mgh.harvard.edu reuter@mit.edu Web : http://reuter.mit.edu
Hi Peter
we use semething similar, although we've extended it and made it significantly more accurate. If you want to contact the CMA you can try: Dave Kennedy kennedy@nmr.mgh.harvard.edu
cheers Bruce
On Thu, 20 Jun 2013, Peter Bohn wrote:
Dear Freesurfer experts,
I was trying to run some longitudinal analysis but whenever I want to use th e commands “long_mris_slopes” or “long_qdec_table” I just get “command not found” as an answer. When I try to look up a package that might include the command, by typing “cnf long_mris_slopes”, I also just get “command not found” as an answer. We are currently using ver sion v 1.313.2.6.
Does anyone of you know if the two commands that I would like to run, are in cluded in this version? Where would I have to look for the additional package if it exists? Or am I by any chance just typing the comma nds incorrect? Many thanks for the help! Sincerely yours Peter
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Martin Reuter -
Peter Bohn