Can you run it with -debug as the first flag (followed by the rest of your arguments) and send us the terminal output?

On 10/24/2012 12:04 PM, Skyler Gabriel Shollenbarger wrote:

Hi Bruce,

I'm having the same error:

export SUBJECTS_DIR=$PWD recon-all -subjid freesurfer -autorecon1 if: Expression Syntax.

Running on: OS X 10.6.8 using both terminal and X11 (freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0)

Thanks in advance, Skyler