Hi all -
Having a bit of an issue with trying to run a make_average with the flag --no-aseg. When written
make_average_subjects --subject subject1 subject2 --no-aseg --out superaverage
the propt runs as if --no-aseg and --out superaverage are subjects i wish to average in with subjects1 and subject2. This is obviously and issue, hoping someone might have an idea of a solution. I have tried moving these flags to somewhere else in the prompt seeing if that would solve it, no luck there.
Best- Michael
Hi Michael
a couple of typos. It should be "make_average_subject" (note no "s"), and it should be --subjects (note the ending "s"). I also don't see a flag named --no-aseg, which I think is why it's being included as a subject. What are you trying to do?
cheers Bruce
On Mon, 4 Jun 2012, michael kruepke wrote:
Hi all - Having a bit of an issue with trying to run a make_average with the flag --no-aseg. When written
make_average_subjects --subject subject1 subject2 --no-aseg --out superaverage
the propt runs as if --no-aseg and --out superaverage are subjects i wish to average in with subjects1 and subject2. This is obviously and issue, hoping someone might have an idea of a solution. I have tried moving these flags to somewhere else in the prompt seeing if that would solve it, no luck there.
Best- Michael
-- Michael D. Kruepke PhD - University of Illinois at Urbana-Champaign BA - Psych - University of Wisconsin-Madison mdkruepke@gmail.com (262)-483-7449
freesurfer@nmr.mgh.harvard.edu