We have processed many of our datasets using the centos4, version 5.0.0 freesurfer build (freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0) on our 64-bit centos5.6 server.
We would like to modify these datasets (i.e. modify segmentations, regenerate surfaces and cortical parcellations, etc.) on our stand-alone linux boxes running 32-bit Ubuntu 11.04. Can we install the 32-bit Centos4 build on Ubuntu (freesurfer-Linux-centos4-stable-pub-v5.0.0) and not have to worry with inconsistencies/incompatibilities between OSs and versions. Thanks.
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yes, you should be able to get the same results on the 32b centos as you do with the 64b centos build. i havent tried it on Ubuntu though, but i think it should work.
you can run bert (the sample subject) on your 32b ubuntu and compare the results, to double-check. like this:
cd $SUBJECTS_DIR ln -s <fs-centos4_x86_64>/subjects/bert bert-centos64b mkdir -p bert-ubunutu32b/mri/orig cp bert-centos64b/mri/orig/???.mgz bert-ubuntu32b/mri/orig/ recon-all -s bert-ubunut32b -all
(wait)
asegstatsdiff bert-centos64b bert-ubuntu32b
you should get zero diffs.
n
On Wed, 2011-09-07 at 10:19 -0500, Alexopoulos, Dimitrios wrote:
We have processed many of our datasets using the centos4, version 5.0.0 freesurfer build (freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0) on our 64-bit centos5.6 server.
We would like to modify these datasets (i.e. modify segmentations, regenerate surfaces and cortical parcellations, etc.) on our stand-alone linux boxes running 32-bit Ubuntu 11.04. Can we install the 32-bit Centos4 build on Ubuntu (freesurfer-Linux-centos4-stable-pub-v5.0.0) and not have to worry with inconsistencies/incompatibilities between OSs and versions. Thanks.
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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