It looks like you do not have the SUBJECTS_DIR env variable set.

On 09/19/2018 01:31 PM, Yacila Isabela Deza Araujo wrote:

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Hello,

Please, find in the attachment the capture of the terminal output. It is basically the same that I get when I run it from the freesurfer/subjects directory.

I also need to say that the problem is only with this Mac. It runs without any problem in a Linux computer.

Thanks a lot for your support

Yacila

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Message: 1 Date: Wed, 19 Sep 2018 15:35:08 +0000 From: Yacila Isabela Deza Araujo yacila_isabela.deza_araujo@tu-dresden.de Subject: [Freesurfer] if: missing file name To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: DC2EE6A5-D782-4874-B1CC-B864B0FC84EF@msx.tu-dresden.de Content-Type: text/plain; charset="us-ascii"

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Dear Freesurfer experts,

Please find in the attachment a file with the errors I get when I try to follow the examples of recon-all

Thanks a lot for your support,

Yacila