External Email - Use Caution
Hi,
We were wondering what the preferred command is for extracting mean gray matter thickness/LGI
I am aware that FS outputs left/right mean thickness but wanted to be conscious of the fact that left/right hemisphere might have different sizes.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab --
---------------------------------------------------------------------- PLEASE NOTE: This message is intended for the use of the person to whom it is addressed. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If you are not the intended recipient, your use of this message for any purpose is strictly prohibited. If you have received this communication in error, please delete the message and notify the sender so that we may correct our records. See our web page at http://secure-web.cisco.com/1BNvfJRjX0fEnr3nm7iMFhLObCbrotFPlWBRQsG1XTL9Ssf8... for a full directory of Beth Israel Lahey Health sites, staff, services and career opportunities.
I don't understand. Why not use the mean thickness from FS? We have an lGI module; we have not supported it in years, but maybe it still works. https://surfer.nmr.mgh.harvard.edu/fswiki/LGI
On 1/10/2024 9:52 AM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
External Email - Use Caution
Hi,
We were wondering what the preferred command is for extracting mean gray matter thickness/LGI
I am aware that FS outputs left/right mean thickness but wanted to be conscious of the fact that left/right hemisphere might have different sizes.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab
--
PLEASE NOTE: This message is intended for the use of the person to whom it is addressed. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If you are not the intended recipient, your use of this message for any purpose is strictly prohibited. If you have received this communication in error, please delete the message and notify the sender so that we may correct our records. See our web page at http://www.bilh.org for a full directory of Beth Israel Lahey Health sites, staff, services and career opportunities.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Sorry, to be clear, there is a measurement for bilateral mean thickness offered by default? I'm able to gather the left mean thickness and the right mean thickness easily.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, January 12, 2024 4:26 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [External] Re: [Freesurfer] extracting measurements for mean gray matter thickness/LGI
I don't understand. Why not use the mean thickness from FS? We have an lGI module; we have not supported it in years, but maybe it still works. https://secure-web.cisco.com/1VsAamFIiyrHgC1fHpczhX9TaRNFmufCHxQtn-XOhmuyE9a...https://secure-web.cisco.com/1sxZdHRGwQixpslNnDM7fe2nxFhipz0Goo4mimu1bQczyNIHC3zjIqirioO3eIfDXyvc_IZcJnQE-h_AARBy6mekaEqIRXmLbkbAO_Us_gyJmqHLXWBAe0SrbY8tP9szKKwGsO_gnkoV4h2oCqpgtYrdViip6acH-LP0XjmtYTwWpoxJS8yBnkP2aqMMbmkpy30lk1g1e6IE3499A6pCetj9-1ZLy4sx1Ra2S-WSr-PCmFpfDqZuzVJa1-UwFABhI1xZZmv-haKg9G-wR9wyOb75unRTkOLmt6TdQaQOuwNtXEYTplcji1G5_OxnR7lzApwg6p1TnoWwCm1hdhkjdzw/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLGI__;!!AIv8Mrc!_zif_gc_qZJfmYGB6AxETsBfWkprrxnEsOgn6g4g5ZPo3QFoRz3wFE7cSQOEj1n7YVvl0KehPmd93THbISFFiVaZ1L-Y$
On 1/10/2024 9:52 AM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
External Email - Use Caution
Hi,
We were wondering what the preferred command is for extracting mean gray matter thickness/LGI
I am aware that FS outputs left/right mean thickness but wanted to be conscious of the fact that left/right hemisphere might have different sizes.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- ________________________________ PLEASE NOTE: This message is intended for the use of the person to whom it is addressed. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If you are not the intended recipient, your use of this message for any purpose is strictly prohibited. If you have received this communication in error, please delete the message and notify the sender so that we may correct our records. See our web page at http://secure-web.cisco.com/1jmLi8sFSetwkt-sXvW1VfGNexwEQW5TyAhKXMPUi6BiH2Ww... for a full directory of Beth Israel Lahey Health sites, staff, services and career opportunities.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1Im1xhFZIA5oSjc399TLHZJHAeXGgcA_cGjEMaMQ5BUDTn6...https://secure-web.cisco.com/1rV32kbO0pcyKIXAnXmMMgI7h4NLmic0_SXdOuf-s7sob8IiewmsQNG3-4MzrfVe9XMnZVonGBlkHCgDaJQ3UdWoNIhalPvJAQ_fT0WBnTGoOQS7_ghyeQ2T3t4lSJgeYFjyEqpfp5UN-Z37kSdAzBJ-r4NUvEV1xx29fH8hO24UfIgZjeGirkWTWldvim0FKhkvi05KF3wLCOjDsKO6bTz2yLtOtQqkbOvJBzeu0SAAE84Jck5pGCCx1Cs-7kg6kfLR4nWhXiJWZK9juR2Lsb9MCuoe3A945sS4ZadCkgvtwijN4RYRWFT51imFPXVZCvytGIgMIIz7MvztL-DKgkw/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer__;!!AIv8Mrc!_zif_gc_qZJfmYGB6AxETsBfWkprrxnEsOgn6g4g5ZPo3QFoRz3wFE7cSQOEj1n7YVvl0KehPmd93THbISFFiTy1yYOy$
why not just average them together? Or are you hoping that FS provides this last small step? I don't think that we do ...
On 1/16/2024 10:04 AM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
External Email - Use Caution
Sorry, to be clear, there is a measurement for bilateral mean thickness offered by default? I'm able to gather the left mean thickness and the right mean thickness easily.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab
--
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu *Sent:* Friday, January 12, 2024 4:26 PM *To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* [External] Re: [Freesurfer] extracting measurements for mean gray matter thickness/LGI I don't understand. Why not use the mean thickness from FS? We have an lGI module; we have not supported it in years, but maybe it still works. *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/LGI https://secure-web.cisco.com/1WbCyr4fYMJSxwqqouq0X7hAiDM6DxlSLiE2pcDL6zvjDpsFlfJrR2q0Wb0HBkWRjHSAYnkqPVhRxDpNfbfSI8Z3EUvr5FDUICUNcOdBnQMYZSOi49cA2IEQpmKSTXMpabLfa44aGI4qCxhXgR_jbm6lUGTWA47qDc6wbC7NbHXdzezT7142fajR44O8apakz-BC57VghRoJK6SPXz7w-qM8QpK_mJXwsvxRQmfNe9rwaUVyGeCEKCXOei22qhqr0C3vTolVpMYER4psHJUBK5diKxZClBuwH6pXY5gBFSE4Qvo3Kfxwx2sNWrFaKKbB5S95jgCz6IznEkNoCqCFs-Q/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLGI__%3B%21%21AIv8Mrc%21_zif_gc_qZJfmYGB6AxETsBfWkprrxnEsOgn6g4g5ZPo3QFoRz3wFE7cSQOEj1n7YVvl0KehPmd93THbISFFiVaZ1L-Y%24
On 1/10/2024 9:52 AM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
External Email - Use Caution
Hi,
We were wondering what the preferred command is for extracting mean gray matter thickness/LGI
I am aware that FS outputs left/right mean thickness but wanted to be conscious of the fact that left/right hemisphere might have different sizes.
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab
--
PLEASE NOTE: This message is intended for the use of the person to whom it is addressed. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If you are not the intended recipient, your use of this message for any purpose is strictly prohibited. If you have received this communication in error, please delete the message and notify the sender so that we may correct our records. See our web page at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://www.bilh.org http://secure-web.cisco.com/1jmLi8sFSetwkt-sXvW1VfGNexwEQW5TyAhKXMPUi6BiH2WwC57OhfGzXPg_QuQ9xYOK_cs9bZ3Kvyu3lh8GMcZxgU9m4msBg1GUrTQMlf_MKeA3ORgYEgEvghGOaVAtOPlbmNRwaA3Ztodm_waB__auOxT8z2_J4SdvnEBRXv6crZZFAwWje2TzPaE6NTZnmFnzjOgbFLPbshonV76-5MA8zU2PNWehXcEj9aS0TjttiF8RAJQzUXeCDvdcNYAWjW5OGQO5VFEGNrkLVZP8wZGQ3Iw1p4Fm9hpvPTThxULNc38UeoV1II5Nhx-Z0dUv18Wv-FVqBDcppkuHMpPNzIQ/http%3A%2F%2Fwww.bilh.org for a full directory of Beth Israel Lahey Health sites, staff, services and career opportunities.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://secure-web.cisco.com/1f84vLpwC9qB6AefM-7tXjxD9Vp7TRQk_k6rg9zVQ3zpj7buiY1XILhpuk1pPqXUf9U9yryi4SwNGX_S2vW3yujKYWNADi1VKFzvrlUJw4rbIskkgVlNUY8aNsOCNaEJKwMHIUvF1qglBOxLGRAdMDvlz9Zb4vJZAeSdnzTFUQnIIyTNWCjhiH7n4X5rMzAdaEd5BPRIopmHRwklmkBK7Fq9wpJ7tFtUurqKKSIEy-QbQnJHXMTgzA-ir_JTT58MhxGDt1WjqX8sbGbnQoXfBAZJeLz_TqlA70a5tc5cfe1pDsLxkUykhExoUML1TAGLX2oCns-6rKhjx23aEJHH7pg/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer__%3B%21%21AIv8Mrc%21_zif_gc_qZJfmYGB6AxETsBfWkprrxnEsOgn6g4g5ZPo3QFoRz3wFE7cSQOEj1n7YVvl0KehPmd93THbISFFiTy1yYOy%24
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
Zeng, Victor (BIDMC - Keshavan - Psychiatry)