Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM group analysis onto inflated surfaces of the template brain. I succeeded to do so by inflating the template provided with SPM and using tkregister2 with the functional data. Are there any recommendations for this procedure with regard to the template to use, or should I use the fsaverage surfaces provided with freesurfer?
Best regards Thomas
Although partially overlapping what you've done already the following SPM toolbox enables you to overlay your data on the SPM canonical brain (colin27), fsaverage or any other surface.
Check
http://spmsurfrend.sourceforge.net/
and for documentation
http://spmsurfrend.sourceforge.net/Documentation/Documentation.html
Itamar
On Jul 25, 2006, at 11:39 AM, Thomas Stephan wrote:
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM group analysis onto inflated surfaces of the template brain. I succeeded to do so by inflating the template provided with SPM and using tkregister2 with the functional data. Are there any recommendations for this procedure with regard to the template to use, or should I use the fsaverage surfaces provided with freesurfer?
Best regards Thomas
--
Dr. Thomas Stephan Email: tstephan@nefo.med.uni-muenchen.de Klinikum Grosshadern Neurologisches Forschungshaus Marchioninistr. 23 Fon: +49 089 / 7095-4819 81377 Muenchen Fax: +49 089 / 7095-4801 ======================================================================
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_________________________________________________ Itamar Kahn, Ph. D. Howard Hughes Medical Institute at Harvard University Athinoula A. Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 1115C Charlestown, MA 02129 E-mail: kahn@nmr.mgh.harvard.edu _________________________________________________
What is it exactly that you want to do? Surface-based group stat analysis or just visualization?
doug
Thomas Stephan wrote:
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM group analysis onto inflated surfaces of the template brain. I succeeded to do so by inflating the template provided with SPM and using tkregister2 with the functional data. Are there any recommendations for this procedure with regard to the template to use, or should I use the fsaverage surfaces provided with freesurfer?
Best regards Thomas
For now just visualization of results. I received a reply from Itamar Kahn yesterday which I would like to post to the list with this mail:
Although partially overlapping what you've done already the following SPM toolbox enables you to overlay your data on the SPM canonical brain (colin27), fsaverage or any other surface.
Check
http://spmsurfrend.sourceforge.net/
and for documentation
http://spmsurfrend.sourceforge.net/Documentation/Documentation.html
Itamar
====================================================================== Dr. Thomas Stephan Email: tstephan@nefo.med.uni-muenchen.de Klinikum Grosshadern Neurologisches Forschungshaus Marchioninistr. 23 Fon: +49 089 / 7095-4819 81377 Muenchen Fax: +49 089 / 7095-4801 ======================================================================
Doug Greve schrieb:
What is it exactly that you want to do? Surface-based group stat analysis or just visualization?
doug
Thomas Stephan wrote:
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM group analysis onto inflated surfaces of the template brain. I succeeded to do so by inflating the template provided with SPM and using tkregister2 with the functional data. Are there any recommendations for this procedure with regard to the template to use, or should I use the fsaverage surfaces provided with freesurfer?
Best regards Thomas
freesurfer@nmr.mgh.harvard.edu