Hi Asim

if you edited the brainmask in recon-mode in freeview the edits will be detected and retained.

cheers Bruce On Mon, 14 Oct 2019, Asim Hassan wrote:

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Good afternoon,

I would like to know is there a way to run recon-all on subjects in which manual edits have been done on the brainmask.mgz files?

Or at least incorporate manually edited brainmask files into the recon-all process?

Thanks!

Asim Hassan Research Technician II Division of Pediatric Neurology University of Texas Southwestern Medical Center

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