Exiting with errors but not sure why

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mri_glmfit-sim - error of fwhm

Borzello, Mia

2 May 2013 2 May '13

11:36 a.m.

Hi freesurfers!

Great tutorial this week!

I've recently run a recon, and it's exited with errors, but I'm not completely sure why. I've attached the error.log, but le tme know if I should attach another file.

Thanks so much, Mia

Attachments:

attachment.html (text/html — 680 bytes)
error.log (application/octet-stream — 93 bytes)

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Douglas N Greve

2 May 2 May

11:45 a.m.

Hi Mia, I'm glad your enjoyed the course. Can you send the recon-all.log file from the subject/scripts folder? doug

On 05/02/2013 11:36 AM, Borzello, Mia wrote:

...

Hi freesurfers!

Great tutorial this week!

I've recently run a recon, and it's exited with errors, but I'm not completely sure why. I've attached the error.log, but le tme know if I should attach another file.

Thanks so much, Mia

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

Borzello, Mia

12:17 p.m.

Great! I've attached it.

Thanks, m

________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Thursday, May 02, 2013 11:45 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Exiting with errors but not sure why

Hi Mia, I'm glad your enjoyed the course. Can you send the recon-all.log file from the subject/scripts folder? doug

On 05/02/2013 11:36 AM, Borzello, Mia wrote:

...

Hi freesurfers!

Great tutorial this week!

I've recently run a recon, and it's exited with errors, but I'm not completely sure why. I've attached the error.log, but le tme know if I should attach another file.

Thanks so much, Mia

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Douglas N Greve

12:28 p.m.

In your recon-all command, you specify the input as a folder: "-i /autofs/space/huygens_001/users/mia/subjects/MGH008_MRI/". You have to pass it a specific file (dicomor some other format). doug

On 05/02/2013 12:17 PM, Borzello, Mia wrote:

...

Great! I've attached it.

Thanks, m

From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Thursday, May 02, 2013 11:45 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Exiting with errors but not sure why

Hi Mia, I'm glad your enjoyed the course. Can you send the recon-all.log file from the subject/scripts folder? doug

On 05/02/2013 11:36 AM, Borzello, Mia wrote:

...
Hi freesurfers!

Great tutorial this week!

I've recently run a recon, and it's exited with errors, but I'm not completely sure why. I've attached the error.log, but le tme know if I should attach another file.

Thanks so much, Mia

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Borzello, Mia
Douglas N Greve