Hello freesurfer experts,
I am hoping that someone can tell me how I can create 3D representations of individual cortical ROIs (labels based on the Desikan/Killiany Atlas) to be used in figures. I'm trying to make figures that show the ROIs that I investigated (like this figure in Desikan et al. paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012853). I know that I can manually make a label in qdec, but I was hoping that there was an automated method to highlighting individual labels/ROIs.
Thank you, Elissa
Hi Elissa,
you can load the labels into tksurfer or freeview and give them whatever color you like. Is that what you are trying to do? I think that's how Rahul created the figures in that paper.
cheers Bruce
On Sat, 4 Oct 2014, Elissa McIntosh wrote:
Hello freesurfer experts,
I am hoping that someone can tell me how I can create 3D representations of individual cortical ROIs (labels based on the Desikan/Killiany Atlas) to be used in figures. I'm trying to make figures that show the ROIs that I investigated (like this figure in Desikan et al. paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012853) . I know that I can manually make a label in qdec, but I was hoping that there was an automated method to highlighting individual labels/ROIs.
Thank you, Elissa
Use mri_annotation2label to break the annotation up into labels, then use mris_label2annot to create a new annotation with just the labels you want.
On 10/05/2014 09:17 AM, Bruce Fischl wrote:
Hi Elissa,
you can load the labels into tksurfer or freeview and give them whatever color you like. Is that what you are trying to do? I think that's how Rahul created the figures in that paper.
cheers Bruce
On Sat, 4 Oct 2014, Elissa McIntosh wrote:
Hello freesurfer experts,
I am hoping that someone can tell me how I can create 3D representations of individual cortical ROIs (labels based on the Desikan/Killiany Atlas) to be used in figures. I'm trying to make figures that show the ROIs that I investigated (like this figure in Desikan et al. paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012853) . I know that I can manually make a label in qdec, but I was hoping that there was an automated method to highlighting individual labels/ROIs.
Thank you, Elissa
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Douglas N Greve -
Elissa McIntosh