Hi Charles, You could use the snapshots option with the QAtools. Alternatively, you can use the <volume>:structure=name_or_value along with the --screenshot option to take snapshots of just the cerebellum. A little scripting would be necessary. Eventually this will be integrated with the QAtools.

https://surfer.nmr.mgh.harvard.edu/fswiki/QATools

-Louis

On Mon, 7 Jan 2013, charles laidi wrote:

Dear freesurfers,

I just finished cerebellar segmentation on almost 100 subjects. I have read the usual checking procedure that should be performed on freesurfer website. However I wasn't able to find if there is a specific checking workflow that can be performed when freesurfer is used for 100 / a lot of subjects. For example FSL provides a tool called slicesdir that allows to check segmentation faster. Is there such a feature with freesurfer ? What kind of checking would you recommend for cerebellar segmentation on 100 subjects ?

Thank you very much and happy new year !

Charles _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer