Hello,
I tried testing out my Fs by creating a new subject directory "ernie" as instructed by the ReadMe file in the "Subjects" folder in Fs, I successfully created the subjects directory for "ernie" and successfully ran autorecon1, I then wanted to try and run autorecon2 for this subject, but it exited with errors. I have attached the recon-all log for this.
I hope someone could possibly help.
Kind regards
The error in the log says 'cannot restore segment prot after reloc: Permission denied', which has been appearing lately with the newest CentOS releases.
Try typing this prior to running recon-all:
/usr/sbin/setenforce 0
You have to run this command as root.
Nick
On Wed, 2009-09-23 at 09:51 +0200, Ahmed, F, Me wrote:
Hello,
I tried testing out my Fs by creating a new subject directory “ernie” as instructed by the ReadMe file in the “Subjects” folder in Fs, I successfully created the subjects directory for “ernie” and successfully ran autorecon1, I then wanted to try and run autorecon2 for this subject, but it exited with errors. I have attached the recon-all log for this.
I hope someone could possibly help.
Kind regards
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you Nick, I'm re-running autorecon2 after typing in that command to see if it makes a difference.
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Nick Schmansky Sent: 23 September 2009 17:18 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] autorecon2 error
The error in the log says 'cannot restore segment prot after reloc: Permission denied', which has been appearing lately with the newest CentOS releases.
Try typing this prior to running recon-all:
/usr/sbin/setenforce 0
You have to run this command as root.
Nick
On Wed, 2009-09-23 at 09:51 +0200, Ahmed, F, Me wrote:
Hello,
I tried testing out my Fs by creating a new subject directory “ernie” as instructed by the ReadMe file in the “Subjects” folder in Fs, I successfully created the subjects directory for “ernie” and successfully ran autorecon1, I then wanted to try and run autorecon2 for this subject, but it exited with errors. I have attached the recon-all log for this.
I hope someone could possibly help.
Kind regards
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Ahmed,
Or you can type 'mris_volmask' and it will either print some help text (indicating it works) or it will print that error message.
I forgot to mention that for a permanent solution to this ''cannot restore segment prot after reloc' problem, you will want to change SELINUX from "enforcing" to "disabled" in the files '/etc/selinux/config' and/or '/etc/sysconfig/selinux' reboot.
Nick
On Mon, 2009-09-28 at 11:26 +0200, Ahmed, F, Me wrote:
Thank you Nick, I'm re-running autorecon2 after typing in that command to see if it makes a difference.
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Nick Schmansky Sent: 23 September 2009 17:18 To: Ahmed, F, Me fahmed@sun.ac.za Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] autorecon2 error
The error in the log says 'cannot restore segment prot after reloc: Permission denied', which has been appearing lately with the newest CentOS releases.
Try typing this prior to running recon-all:
/usr/sbin/setenforce 0
You have to run this command as root.
Nick
On Wed, 2009-09-23 at 09:51 +0200, Ahmed, F, Me wrote:
Hello,
I tried testing out my Fs by creating a new subject directory “ernie” as instructed by the ReadMe file in the “Subjects” folder in Fs, I successfully created the subjects directory for “ernie” and successfully ran autorecon1, I then wanted to try and run autorecon2 for this subject, but it exited with errors. I have attached the recon-all log for this.
I hope someone could possibly help.
Kind regards
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Ahmed, F, Me <fahmed＠sun.ac.za> -
Nick Schmansky