Hi Thang,

go to the subject's mri dir and run:

mri_convert brain brain.BRIK, and you should get a skull stripped afni volume (or .mnc or .img for minc or analyze).

cheers, Bruce

On Sat, 25 Jun 2005, Ngo Trung Thanh wrote:

Hi,

I installed FreeSurfer in Linux and ran some test on my data. The Volume Processing step and Create Surface step ran smoothly.

...

From the guide, after these steps, I can view the

result by clicking on the Volume button and Surface button. But these, two buttons do not work. I tried to run the tkmedit command but it generate an error of loading libtk8.3.so library. I learned that I can use the static version of tkmedit, but it generated the same error. Also, I found that tksurfer.static is missing in the distribution.

Could anyone show me how I can fix this problem and where I can find tksurfer.static?

Another question is that after the Volume Processing step, there should be some skull stripped data. Is there any ways that I can convert these data into some familiar 3-D image formats, like MINC or Analyze, so that I can view it in another program.

Thanks a lot.

Best, Thanh Ngo

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