Doug,

This worked great! Thanks.

George P.

On Wed, 27 Oct 2004, Doug Greve wrote:

Hi George,

try clicking in the image window and hitting 'i'. This turns on an automatic intensity normalization. It does not work as well as I'd like, but it will probably help a lot for this sort of thing.

doug

George Papadimitriou wrote:

...

I am trying to register a lowb volume to an average volume.

In this particular case, I'm trying to use tkregister2:

% tkregister2 --targ avg_000.bfloat --mov indivsubj_000.bfloat --reg \ register.dat

I am having a problem with the brightness of the TARG volume. It seems to be set near ~1, and using the fmov option only adjusts the brightness on the MOV volume. It is kind of hard to align them, when the target volume looks like a binary mask (appears all white). Have you seen this before?

Changing the contrast doesn't seem to help.

Thanks, George P. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422