External Email - Use Caution
Dear freesurfer experts,
Is there a way to import the individual surface myelin maps from the human connectome project database to freesurfer and use them as overlays? Or can we create them in freesurfer?
Mudathir
External Email - Use Caution
You should be able to load files like ${StudyFolder}/${Subject}/MNINonLinear/Native/${Subject}.${Hemisphere}.MyelinMap[_BC].native.func.gii in Freeview.
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of バキット・ムダシル m-bakhit@fmu.ac.jp Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, March 15, 2021 at 10:18 PM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Meylin overlay
External Email - Use Caution Dear freesurfer experts,
Is there a way to import the individual surface myelin maps from the human connectome project database to freesurfer and use them as overlays? Or can we create them in freesurfer?
Mudathir
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
External Email - Use Caution
Thanks Matt. I tried it with version 7.1.1 of freesurfer didn’t work but worked fine with freesurfer 6. With version 7.1 it failed to load the gii file. Any idea how to fix it?
Mudathir
On Mar 16, 2021, at 21:08, Glasser, Matthew glasserm@wustl.edu wrote:
External Email - Use CautionYou should be able to load files like ${StudyFolder}/${Subject}/MNINonLinear/Native/${Subject}.${Hemisphere}.MyelinMap[_BC].native.func.gii in Freeview.
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of バキット・ムダシル <m-bakhit@fmu.ac.jp mailto:m-bakhit@fmu.ac.jp> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Date: Monday, March 15, 2021 at 10:18 PM To: "freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Meylin overlay
External Email - Use CautionDear freesurfer experts,
Is there a way to import the individual surface myelin maps from the human connectome project database to freesurfer and use them as overlays? Or can we create them in freesurfer?
Mudathir
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1dVyyIVOL4vUyrUJnnyD5dKmi7hFYV2vkiJm8YkOpaSoUJt... https://secure-web.cisco.com/1dVyyIVOL4vUyrUJnnyD5dKmi7hFYV2vkiJm8YkOpaSoUJtUrZUhJkzn_Vyu4jjgR66BUATSUNxEuPP1slYgmzRF0h2aCbtsHujvj-8_gLa5GbJviT_bDBo82N2AHNv0ECL07qpGfwA1bREYDl8ymRlISm9o0_YSJjENL1fcxNyb1BXkiEZVKlny0h-XAVgTVWWOM0p-gMxWxM_xlvrWoy8GPir3sfx7_3i1n0MIAMn54ma2Hp3lD_ubO1bVltzsRWS0DbE2J0bWGHSg8kr1H4A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
External Email - Use Caution
There is a bug in Freeview, I believe it has been fixed in the dev build.
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of バキット・ムダシル m-bakhit@fmu.ac.jp Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March 16, 2021 at 10:38 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Meylin overlay
External Email - Use Caution Thanks Matt. I tried it with version 7.1.1 of freesurfer didn’t work but worked fine with freesurfer 6. With version 7.1 it failed to load the gii file. Any idea how to fix it?
Mudathir
On Mar 16, 2021, at 21:08, Glasser, Matthew <glasserm@wustl.edumailto:glasserm@wustl.edu> wrote:
External Email - Use Caution
You should be able to load files like ${StudyFolder}/${Subject}/MNINonLinear/Native/${Subject}.${Hemisphere}.MyelinMap[_BC].native.func.gii in Freeview.
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of バキット・ムダシル <m-bakhit@fmu.ac.jpmailto:m-bakhit@fmu.ac.jp> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Monday, March 15, 2021 at 10:18 PM To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Meylin overlay
External Email - Use Caution Dear freesurfer experts,
Is there a way to import the individual surface myelin maps from the human connectome project database to freesurfer and use them as overlays? Or can we create them in freesurfer?
Mudathir
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1dVyyIVOL4vUyrUJnnyD5dKmi7hFYV2vkiJm8YkOpaSoUJtUrZUhJkzn_Vyu4jjgR66BUATSUNxEuPP1slYgmzRF0h2aCbtsHujvj-8_gLa5GbJviT_bDBo82N2AHNv0ECL07qpGfwA1bREYDl8ymRlISm9o0_YSJjENL1fcxNyb1BXkiEZVKlny0h-XAVgTVWWOM0p-gMxWxM_xlvrWoy8GPir3sfx7_3i1n0MIAMn54ma2Hp3lD_ubO1bVltzsRWS0DbE2J0bWGHSg8kr1H4A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
External Email - Use Caution
Yes. After I updated the freeview it worked! Thanks a lot Matt.
Mudathir
On Mar 17, 2021, at 11:49, Glasser, Matthew glasserm@wustl.edu wrote:
External Email - Use CautionThere is a bug in Freeview, I believe it has been fixed in the dev build.
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of バキット・ムダシル <m-bakhit@fmu.ac.jp mailto:m-bakhit@fmu.ac.jp> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Date: Tuesday, March 16, 2021 at 10:38 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Meylin overlay
External Email - Use CautionThanks Matt. I tried it with version 7.1.1 of freesurfer didn’t work but worked fine with freesurfer 6. With version 7.1 it failed to load the gii file. Any idea how to fix it?
Mudathir
On Mar 16, 2021, at 21:08, Glasser, Matthew <glasserm@wustl.edu mailto:glasserm@wustl.edu> wrote:
External Email - Use CautionYou should be able to load files like ${StudyFolder}/${Subject}/MNINonLinear/Native/${Subject}.${Hemisphere}.MyelinMap[_BC].native.func.gii in Freeview.
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of バキット・ムダシル <m-bakhit@fmu.ac.jp mailto:m-bakhit@fmu.ac.jp> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Date: Monday, March 15, 2021 at 10:18 PM To: "freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Meylin overlay
External Email - Use CautionDear freesurfer experts,
Is there a way to import the individual surface myelin maps from the human connectome project database to freesurfer and use them as overlays? Or can we create them in freesurfer?
Mudathir
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://secure-web.cisco.com/1dVyyIVOL4vUyrUJnnyD5dKmi7hFYV2vkiJm8YkOpaSoUJtUrZUhJkzn_Vyu4jjgR66BUATSUNxEuPP1slYgmzRF0h2aCbtsHujvj-8_gLa5GbJviT_bDBo82N2AHNv0ECL07qpGfwA1bREYDl8ymRlISm9o0_YSJjENL1fcxNyb1BXkiEZVKlny0h-XAVgTVWWOM0p-gMxWxM_xlvrWoy8GPir3sfx7_3i1n0MIAMn54ma2Hp3lD_ubO1bVltzsRWS0DbE2J0bWGHSg8kr1H4A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1I_3qZceVN8ce9ZoKkPNUr42OpjMGTB48QsX25DlrCyJ3bN... https://secure-web.cisco.com/1I_3qZceVN8ce9ZoKkPNUr42OpjMGTB48QsX25DlrCyJ3bNpJrI3yD8Zp3kv2pO5S9qjQSCfenUzwcCfRmY-esa091xs4ZT9m9L6XOa34iPT11vVRsYjk1BmBQArEk31y1oMIPj09Y82Zzs_hTVqOp36otWKbPAQrkdwMgoIYYj9D0vHKTaSsBXaNAIRHT75-L2Grt4ZTR1WTs___ipOGMniRbnRNAIXsT380rOyQRX2PSkt-V_SpptGo6RzIingAxqK4pTAKMQvjUTuqgwhGiA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
freesurfer@nmr.mgh.harvard.edu
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Glasser, Matthew -
バキット・ムダシル