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Dear FreeSurfer Developers,
I am trying to merge two atlases on the fsaverage brain for my project: aparc+aseg.mgz and brainstemSsLabels.v13.mgz. My goal is for brainstemSsLabels.v13.mgz to serve as a subdivision of the single brainstem label in aparc+aseg.mgz, so that I can obtain a more fine-grained brainstem parcellation.
Could anyone suggest a recommended way to merge these two label volumes and save the resulting atlas either through Freeview or via the command line? Thank you very much for your help. Best, Zoe
freesurfer@nmr.mgh.harvard.edu