Is this functional (FSFAST) data? Then you can use mri_vol2vol, something like:

mri_vol2vol --mov fsfast.mni305.nii.gz \ --targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ --reg $FREESURFER_HOME/subjects/fsaverage/mri.2mm/reg.2mm.mni152.dat --o output.nii.gz

I don't know how the run the FSL nonlinear warp.

doug

Gabriel A. Tobon wrote:

Hello Freesurfers,

Is there any way to run random effects analysis using mri_glmfit with registration to MNI152 instead of MNI309? Also, is there a way to use a nonlinear warp instead of an affine transformation (for example by using "applywarp" from FSL) to bring data to a common space for random effects analysis using mri_glmfit?

Thank you! Gabriel

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