Dear Freesurfers,
I have performed make_face_parcellation on fsaverage (with ic5) (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the parcellation into matlab an noticed that while colortable.table has 10242 rows (as expected), length(unique(colortable.table(:,5))) produces 9834 => some entries are in the list more than once. If I grasped the procedure correctly, the entries in label are determined by colortable.table(:,5) and colortable.table(:,5) is determined by: % Column 5 is the structure ID, calculated from % R + G*2^8 + B*2^16 + flag*2^24
One example for this problem is colortable.table(43,:) and colortable.table(86,:) both read: 0 0 170 0 11141120
How are Rm G, B determined? I guess one quick fix would be to introduce flags >0. Would that affect anything else? Or, is there a way to force my own indices onto colortable.table(:,5)? (if I change this entry, save the annot and load the annot, the entry is at R + G*2^8 + B*2^16 + flag*2^24 again
(I already encountered the effects of this problem a couple of months ago (2. in this post http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).)
Thank you so much for your help, Franz
Hi Franz, this was noted and addressed a few weeks ago. You can download a new version here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux doug
On 10/25/2012 10:33 AM, Franz Liem wrote:
Dear Freesurfers,
I have performed make_face_parcellation on fsaverage (with ic5) (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the parcellation into matlab an noticed that while colortable.table has 10242 rows (as expected), length(unique(colortable.table(:,5))) produces 9834 => some entries are in the list more than once. If I grasped the procedure correctly, the entries in label are determined by colortable.table(:,5) and colortable.table(:,5) is determined by: % Column 5 is the structure ID, calculated from % R + G*2^8 + B*2^16 + flag*2^24
One example for this problem is colortable.table(43,:) and colortable.table(86,:) both read: 0 0 170 0 11141120
How are Rm G, B determined? I guess one quick fix would be to introduce flags >0. Would that affect anything else? Or, is there a way to force my own indices onto colortable.table(:,5)? (if I change this entry, save the annot and load the annot, the entry is atR + G*2^8 + B*2^16 + flag*2^24again
(I already encountered the effects of this problem a couple of months ago (2. in this post http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).)
Thank you so much for your help, Franz
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Doug, thanks for the quick response. Sorry that I missed the post. I downloaded the mac intel leopard dev from the nightly built and ran make_face_parcellation. Running it with ic5 produced 10236 unique values (instead of 10242), running it with ic3 641 (instead of 642)
Is it possible that this is not the latest version? The BuildTimeStamp is: Jun 24 2012 06:10:12, you uploaded the ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux version on 16.07.12.
ProgramName: mris_make_face_parcellation ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2012/10/26-11:34:24-GMT BuildTimeStamp: Jun 24 2012 06:10:12 CVS: $Id: mris_make_face_parcellation.c,v 1.18 2012/06/07 17:52:09 greve Exp $ ... Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000
Thanks for your help, Franz
Am 25.10.2012 um 18:29 schrieb Douglas N Greve:
Hi Franz, this was noted and addressed a few weeks ago. You can download a new version here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux doug
On 10/25/2012 10:33 AM, Franz Liem wrote:
Dear Freesurfers,
I have performed make_face_parcellation on fsaverage (with ic5) (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the parcellation into matlab an noticed that while colortable.table has 10242 rows (as expected), length(unique(colortable.table(:,5))) produces 9834 => some entries are in the list more than once. If I grasped the procedure correctly, the entries in label are determined by colortable.table(:,5) and colortable.table(:,5) is determined by: % Column 5 is the structure ID, calculated from % R + G*2^8 + B*2^16 + flag*2^24
One example for this problem is colortable.table(43,:) and colortable.table(86,:) both read: 0 0 170 0 11141120
How are Rm G, B determined? I guess one quick fix would be to introduce flags >0. Would that affect anything else? Or, is there a way to force my own indices onto colortable.table(:,5)? (if I change this entry, save the annot and load the annot, the entry is atR + G*2^8 + B*2^16 + flag*2^24again
(I already encountered the effects of this problem a couple of months ago (2. in this post http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).)
Thank you so much for your help, Franz
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.mac
doug
On 10/26/2012 07:38 AM, Franz Liem wrote:
Dear Doug, thanks for the quick response. Sorry that I missed the post. I downloaded the mac intel leopard dev from the nightly built and ran make_face_parcellation. Running it with ic5 produced 10236 unique values (instead of 10242), running it with ic3 641 (instead of 642)
Is it possible that this is not the latest version? The BuildTimeStamp is: Jun 24 2012 06:10:12, you uploaded the ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux version on 16.07.12.
ProgramName: mris_make_face_parcellation ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2012/10/26-11:34:24-GMT BuildTimeStamp: Jun 24 2012 06:10:12 CVS: $Id: mris_make_face_parcellation.c,v 1.18 2012/06/07 17:52:09 greve Exp $ ... Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000Thanks for your help, Franz
Am 25.10.2012 um 18:29 schrieb Douglas N Greve:
Hi Franz, this was noted and addressed a few weeks ago. You can download a new version here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux doug
On 10/25/2012 10:33 AM, Franz Liem wrote:
Dear Freesurfers,
I have performed make_face_parcellation on fsaverage (with ic5) (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the parcellation into matlab an noticed that while colortable.table has 10242 rows (as expected), length(unique(colortable.table(:,5))) produces 9834 => some entries are in the list more than once. If I grasped the procedure correctly, the entries in label are determined by colortable.table(:,5) and colortable.table(:,5) is determined by: % Column 5 is the structure ID, calculated from % R + G*2^8 + B*2^16 + flag*2^24
One example for this problem is colortable.table(43,:) and colortable.table(86,:) both read: 0 0 170 0 11141120
How are Rm G, B determined? I guess one quick fix would be to introduce flags>0. Would that affect anything else? Or, is there a way to force my own indices onto colortable.table(:,5)? (if I change this entry, save the annot and load the annot, the entry is atR + G*2^8 + B*2^16 + flag*2^24again
(I already encountered the effects of this problem a couple of months ago (2. in this post http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).)
Thank you so much for your help, Franz
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Doug, works great. Thanks a lot. Franz
Am 26.10.2012 um 22:13 schrieb Douglas N Greve:
Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.mac
doug
On 10/26/2012 07:38 AM, Franz Liem wrote:
Dear Doug, thanks for the quick response. Sorry that I missed the post. I downloaded the mac intel leopard dev from the nightly built and ran make_face_parcellation. Running it with ic5 produced 10236 unique values (instead of 10242), running it with ic3 641 (instead of 642)
Is it possible that this is not the latest version? The BuildTimeStamp is: Jun 24 2012 06:10:12, you uploaded the ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux version on 16.07.12.
ProgramName: mris_make_face_parcellation ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2012/10/26-11:34:24-GMT BuildTimeStamp: Jun 24 2012 06:10:12 CVS: $Id: mris_make_face_parcellation.c,v 1.18 2012/06/07 17:52:09 greve Exp $ ... Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000Thanks for your help, Franz
Am 25.10.2012 um 18:29 schrieb Douglas N Greve:
Hi Franz, this was noted and addressed a few weeks ago. You can download a new version here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux doug
On 10/25/2012 10:33 AM, Franz Liem wrote:
Dear Freesurfers,
I have performed make_face_parcellation on fsaverage (with ic5) (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the parcellation into matlab an noticed that while colortable.table has 10242 rows (as expected), length(unique(colortable.table(:,5))) produces 9834 => some entries are in the list more than once. If I grasped the procedure correctly, the entries in label are determined by colortable.table(:,5) and colortable.table(:,5) is determined by: % Column 5 is the structure ID, calculated from % R + G*2^8 + B*2^16 + flag*2^24
One example for this problem is colortable.table(43,:) and colortable.table(86,:) both read: 0 0 170 0 11141120
How are Rm G, B determined? I guess one quick fix would be to introduce flags>0. Would that affect anything else? Or, is there a way to force my own indices onto colortable.table(:,5)? (if I change this entry, save the annot and load the annot, the entry is atR + G*2^8 + B*2^16 + flag*2^24again
(I already encountered the effects of this problem a couple of months ago (2. in this post http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).)
Thank you so much for your help, Franz
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
Franz Liem