Hi Keyma,

mris2rgb is old as the hills, and should be removed. Maybe it is still in your version of recon-all or morph_subject?

cheers, Bruce

On Tue, 29 Jun 2004, Chekema Nayasha Prince wrote:

Hello,

I received the following segmentation fault when I ran morph_subject:

mris2rgb -o hr_MPRAGE_040623/.reg -both -c /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//surf/lh.sulc -canon /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//surf/lh.sphere.reg /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//surf/lh.sphere.reg /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//rgb

---

using hr_MPRAGE_040623/.reg as output stem reading canonical coordinates from /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//surf/lh.sphere.reg. writing rgb file /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//rgb/lateral.lh.hr_MPRAGE_040623/.reg.rgb iopen: can't open output file /home/freesurfer/freesurfer-20040218/freesurfer//subjects/hr_MPRAGE_040623//rgb/lateral.lh.hr_MPRAGE_040623/.reg.rgb

No such file or directory Segmentation fault mris2rgb exited with errors

After checking the message thread I noticed that someone else also had a similar error and you recommended that they comment out the mris2rgb line. I looked in the morph_rgb-lh and rh files and the call to mris2rgb was already commented out. Is there any other other reason that this error could be appearing. I ran the subject with recon-all -stage1 and then I did the manual edits and run fix_subject and make_final_surfaces_subject.

thanks -keyma _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer