Greetings,
I have two questions regarding FS volume measurements.
I intend to use the volume information of .stats files but I got some doubts regarding the methods used.
1) I read that eTIV estimation is based on the TAL transformation, but what about the volumes of cortical and subcortical areas? Is it a simple voxel count?
2) In some studies the authors normalize the volumes to eTIV. In others the authors don't do any normalization. Some of them use it as co-variate. What's your opinion regarding this matter?
Thank you in advance!
Best regards,
1. This is based on Randy Buckner's paper showing that the tal xform gives you a pretty accurate estimate of the TIV (which is hard to compute directly from a T1 image since you can't distinguish bone from CSF).
2. I think including it as a covariate is a better approach, but perhaps others can comment. The volumes require some type of normalization/regression as otherwise you are introducing uninteresting variance (since volume is correlated with head size). Thickness is pretty much uncorellated, so you don't need to control for TIV in a thicknes study.
cheers Bruce
On Wed, 8 Jun 2016, Otília wrote:
Greetings,
I have two questions regarding FS volume measurements.
I intend to use the volume information of .stats files but I got some doubts regarding the methods used.
- I read that eTIV estimation is based on the TAL transformation, but what
about the volumes of cortical and subcortical areas? Is it a simple voxel count?
2) In some studies the authors normalize the volumes to eTIV. In others the authors don't do any normalization. Some of them use it as co-variate. What's your opinion regarding this matter?
Thank you in advance!
Best regards,
freesurfer@nmr.mgh.harvard.edu