Dear Freesurfers,
Can I run recon-all -autorecon2-wm and recon-all -autorecon2-pial on the same subject at the same time? Or can I perhaps do smthg like recon-all -autorecon2-wm -autorecon2-pial?
Many thanks Larissa
Hi Larissa,
autorecon2-wm should be a superset of autorecon2-pial, so you shouldn't have to run both.
cheers Bruce On Fri, 17 Dec 2010, Larissa Stanberry wrote:
Dear Freesurfers,
Can I run recon-all -autorecon2-wm and recon-all -autorecon2-pial on the same subject at the same time? Or can I perhaps do smthg like recon-all -autorecon2-wm -autorecon2-pial?
Many thanks Larissa _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hello FS Experts,
I am trying to generate the whole brain gray matter image, I use aparc_aseg.mgz - wm.mgz for gray matter mask, then use this mask for gray matter. Is it correct? What is the difference between aseg.mgz and ribbon.mgz? Hope your help. Thanks.
Aize
Do you want cortical and subcortical or just cortical? doug
caoaize wrote:
Hello FS Experts,
I am trying to generate the whole brain gray matter image, I use aparc_aseg.mgz - wm.mgz for gray matter mask, then use this mask for gray matter. Is it correct? What is the difference between aseg.mgz and ribbon.mgz? Hope your help. Thanks.
Aize
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Bruce Fischl -
caoaize -
Douglas N Greve -
Larissa Stanberry