I sent this e-mail before, but it seems that it arrived nowhere. I hope you can have a look at it still - thanks.

Niels

Hi Doug,

Thank you for your reply. Just to make sure, you linked a file called mri_surf2surf instead of mri_vol2surf. Is this what you intended?

It seems as if the feat2surf script has some errors still - at least for me. The script as you made it searches for .img and .nii files. However when I run the script, the script stops when not finding any .img files. Or to be more precise: 1) it does not seem to look for any .nii files 2) it sets srcvol = mblok1+.feat/stats/*.img which will lead to errors later on in the script

So the imglist variable is not filled with .nii images. When I run the script with set imglist = ($statsdir/*.nii), it finds my zstat*.nii images and properly sets e.g. srcvol = mblok1+.feat/stats/zsat1.nii etc

Also, the script complains that the mkdir command receives too few arguments. This results in my case that the output of the mrui_vol2_surf command is stored in the $HOME dir.

When using the mri_vol2surf manually I did manage to overlay the stats output. (only when using the mri_vol2surf of the previous (november) dev release).

I would be grateful if you could send me the updated mri_vol2_surf.

Thanks again for your help.

The next step for me is a functional mri analysis in spherical space... so I might knock on your door again with that if I may.

Niels