Hi Lara, I think that is right, but I don't use gii much doug

On 2/12/2020 2:05 PM, Lara Foland-Ross wrote:

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Hello Freesurfer experts,

I'd like to convert my subjects' thickness mgh files to gii format for use in an analysis with a separate software package. Could you please confirm whether the following command is appropriate? Will this provide thickness maps that are in alignment?

mris_convert -c lh.thickness.fwhm15.fsaverage.mgh fsaverage/surf/lh.white lh.thickness.fwhm15.fsaverage.gii

Many thanks, Lara

Lara Foland-Ross, Ph.D. Senior Research Associate and Imaging Lab Manager Center for Interdisciplinary Brain Sciences Research Stanford University School of Medicine 401 Quarry Road, Room 1356 Stanford, CA 94305-5795

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