Hi, I attached a text file of the reconall log for a subject which lists a segmentation fault that I have received. I have corrected the talairach transform for this subject, checked the inorm and skull strip and continue to receive this error. There are some minor bumps on the inflated surface that correspond to some locations in the wm.mgz where the wm extends very slightly beyond the pial surface. How can I tell if this is leading to the segmentation fault and if it is worth correcting? Can I tell from the error message or do i just have to correct this and rerun recon2 and 3? I also included a tiff of lh.inflated and one of a defect in the wm.mgz that can be seen on the surface. Any advice is greatly appreciated! Thanks, Cameron
Cameron,
I am able to replicate this segfault, and we are working on solution. It looks to be a bug in the code, and not something to do with the subject. Hopefully, a fix will be forthcoming.
Nick
On Tue, 2007-01-16 at 11:23 -0500, Cameron Ellis wrote:
Hi, I attached a text file of the reconall log for a subject which lists a segmentation fault that I have received. I have corrected the talairach transform for this subject, checked the inorm and skull strip and continue to receive this error. There are some minor bumps on the inflated surface that correspond to some locations in the wm.mgz where the wm extends very slightly beyond the pial surface. How can I tell if this is leading to the segmentation fault and if it is worth correcting? Can I tell from the error message or do i just have to correct this and rerun recon2 and 3? I also included a tiff of lh.inflated and one of a defect in the wm.mgz that can be seen on the surface. Any advice is greatly appreciated! Thanks, Cameron _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu