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Thank you very much for your answer. I will give it a try.

Best wishes, Xiaofang

At 2021-07-22 00:42:19, "Paul Wighton" paul@corticometrics.com wrote:

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HI Xiaofang,

I'm not sure there is an out-of-the box method to do this, but you should be able to modify FreeSurfer's qatools to generate relevant metrics and screenshots for your application.

See MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1XnVasMRFamUQSKoYFL1stmhNfFytzZWADYzksWlkFL-pjV... for more info.

-Paul

On Wed, Jul 21, 2021 at 12:07 PM 梁晓芳 vhryc1@163.com wrote:

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Hi,

I have tried to segment the thalamic nuclei and amygdala, using segmentThalamicNuclei.sh and segmentHA_T1.sh. But is there any method to quickly check whether the segmentation is accurate?

Because I have so many scans that using freeview to check the results one by one may cost me a lot of time. Meanwhile those volumes extracted from the segmentation are really important in my study. So I think I do need to ensure the accurate segmentation.

Thank you very much! Best wishes, Xiaofang

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