HI Nellie

not really. We have some prototype tools for this, but nothing we are able to distribute at this time (except for the relatively coarse brainstem targets that are in V6)

cheers Bruce On Wed, 2 Nov 2016, nellie wrote:

Hi, FreeSurfer experts,

I would like to know is there any command to measure the volume of substantia nigra, red nucleus, and anyother nucleis in brainstem by using FS ?

Thanks in advance, Nellie