Hi all,
I have started working with clusterwise correction, and initially attempted to run the mri_glmfit mc-z script with 6000 iterations. After two weeks it still wasn't finished, so I stopped it, and as a test ran the script with 100 iterations to see how long it would take. It still took several days. Processing power is not an issue here, so I was wondering how long the script should take to run the desired amount of iterations (>5000). Thanks,
Nathan
Hi Natham,
This should not take that long. For me, it has never been more than 2-3 days for 5000 interactions using mc-z.
Hi all,
I have started working with clusterwise correction, and initially attempted to run the mri_glmfit mc-z script with 6000 iterations. After two weeks it still wasn't finished, so I stopped it, and as a test ran the script with 100 iterations to see how long it would take. It still took several days. Processing power is not an issue here, so I was wondering how long the script should take to run the desired amount of iterations (>5000). Thanks,
Nathan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
That is quite excessive, but I'll need more info than you have supplied. Can you take a look at surfer.nmr.mgh.harvard.edu/fswiki/BugReporting and send me the info requested there?
thanks!
doug Dankner, Nathan (NIH/NIMH) [F] wrote:
Hi all,
I have started working with clusterwise correction, and initially attempted to run the mri_glmfit mc-z script with 6000 iterations. After two weeks it still wasn't finished, so I stopped it, and as a test ran the script with 100 iterations to see how long it would take. It still took several days. Processing power is not an issue here, so I was wondering how long the script should take to run the desired amount of iterations (>5000). Thanks,
Nathan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Doug,
The Linux distribution I am using is equivalent to Redhat 5, and I am running this on freesurfer version 4.2.0. The script I ran was mri_glmfit-sim-mc-z.abs.2, which the qdec gui output for me. I believe I attempted it with 6000 iterations. Do you need any more info? It seems the other things requested on the bug reporting site are specific to people at MGH.
On 6/2/09 12:06 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
That is quite excessive, but I'll need more info than you have supplied. Can you take a look at surfer.nmr.mgh.harvard.edu/fswiki/BugReporting and send me the info requested there?
thanks!
doug Dankner, Nathan (NIH/NIMH) [F] wrote:
Hi all,
I have started working with clusterwise correction, and initially attempted to run the mri_glmfit mc-z script with 6000 iterations. After two weeks it still wasn't finished, so I stopped it, and as a test ran the script with 100 iterations to see how long it would take. It still took several days. Processing power is not an issue here, so I was wondering how long the script should take to run the desired amount of iterations (>5000). Thanks,
Nathan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Can you send the log file?
Nathan Dankner wrote:
Doug,
The Linux distribution I am using is equivalent to Redhat 5, and I am running this on freesurfer version 4.2.0. The script I ran was mri_glmfit-sim-mc-z.abs.2, which the qdec gui output for me. I believe I attempted it with 6000 iterations. Do you need any more info? It seems the other things requested on the bug reporting site are specific to people at MGH.
On 6/2/09 12:06 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
That is quite excessive, but I'll need more info than you have supplied. Can you take a look at surfer.nmr.mgh.harvard.edu/fswiki/BugReporting and send me the info requested there?
thanks!
doug Dankner, Nathan (NIH/NIMH) [F] wrote:
Hi all,
I have started working with clusterwise correction, and initially attempted to run the mri_glmfit mc-z script with 6000 iterations. After two weeks it still wasn't finished, so I stopped it, and as a test ran the script with 100 iterations to see how long it would take. It still took several days. Processing power is not an issue here, so I was wondering how long the script should take to run the desired amount of iterations (>5000). Thanks,
Nathan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Dankner, Nathan (NIH/NIMH) [F] -
Douglas N Greve -
Nathan Dankner
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Pratap Kunwar