Hi,
I need to overlay some functional imaging data onto a structural scan to create some figures. How would I do this?
I tried an older tutorial but it seems the files don't exist anymore in the tutorial dataset (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Visualization). However the image provided is what I would like to create as a figure. It is not necessary to overlay onto the participants brain and could easily get away with overlaying it on a standard brain.
I was given analysis files from FSL. Namely the one I was told to overlay was *.nii.gz file following the FEAT analysis from FSL.
Regards in advance.
_______________________________________ Bryan Chiu Undergraduate Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia
Hi Bryan
have you done freesurfer recons on the anatomicals? If so, you can use bbregister and mri_vol2surf to map the functional data onto the surface.
cheers BruceOn Sun, 28 Sep 2014, Chiu, Bryan (PHTH) wrote:
Hi, I need to overlay some functional imaging data onto a structural scan to create some figures. How would I do this?
I tried an older tutorial but it seems the files don't exist anymore in the tutorial dataset (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Visualization). However the image provided is what I would like to create as a figure. It is not necessary to overlay onto the participants brain and could easily get away with overlaying it on a standard brain.
I was given analysis files from FSL. Namely the one I was told to overlay was *.nii.gz file following the FEAT analysis from FSL.
Regards in advance.
Bryan Chiu Undergraduate Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Chiu, Bryan (PHTH)