Hi Doug,

the file fmcsm4-all.txt, .../bold/tap_lh_long_CD_R01BTX_pat6_sess1_sm4/caud_LH_t3_5_sm4_75thresh.

I think tool using the command 'func2roi-sess' produces this file, but I would like to confirm. An example command we use is:

func2roi-sess -roidef M6_LH_t6_0_sm5_0thresh -analysis tap_lh_long_aftpat1_sm5 -maskcontrast tap_lh_long_aftpat1_sm5_contrast -labelfile /space/meso/20/users/ablood/SD_botox/SD_botox_recons/SD_aftbotox_pat1_fsfast_recon/label/M6_LH_aftpat1.label -maskthresh 6.0 -masktail pos -maskmap t -s SD_aftbotox_pat1_fsfast -df sessdirfile

Thanks!

Sandra

Hi Sandra, I'm not sure I know what file you are talking about. What is its exact name? doug

swoodman@nmr.mgh.harvard.edu wrote:

...

Hello,

Just a quick question.. when is the file (within the bold subdirectories) fmcsm5(4)-all.txt made? Is it created as a result of running func2roi?

Thank you!

Sandra _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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