Good morning,
I tried to run the following command:
recon-all -skullstrip -clean-bm -gcut -subjid S01
to remove the skull and remaining dura mater. However, for some subjects, I get the following error:
** Gcutted brain is much smaller than the mask! ** Using the mask as the output instead!
I tried adjusting the wsthresh, as suggested in previous posts, but without success.
Is there something else, I can try?
Thank you in advance for your help,
Isabelle
freesurfer@nmr.mgh.harvard.edu