I don't know what that means. It is not an FS issue, it is something wrong on your system. doug

On 05/14/2012 06:17 AM, Long wrote:

Hi Douglas,

I used the command:

tkmedit fslt1mnifs orig.mgz ./lh.zmap.mgh

but it said: Resource temporarily unavailable.

Best, Xiangyu

On Tue, Apr 24, 2012 at 5:01 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

How does it look in tkmedit?


On 04/23/2012 12:20 PM, Long wrote:

    Hi Douglas,

    I tried to do spatial normalization for volume data, all steps
    are following:

    1) bbregister --mov fsubj01_rest_res_co_001.hdr --bold --s
    subj01 --init-fsl --reg bb_register.dat

    I checked the result by tkregister2, it looked good.

    2) mris_preproc --target fsaverage --hemi lh --iv
    fsubj01_001.hdr bb_register.dat --projfrac 0.5 --out lh.zmap.mgh

    3) mri_surf2vol --surfval lh.zmap.mgh --hemi lh --identity
    fsaverage --outvol subj01_001.nii.gz --projfrac 0.5
    --fillribbon --template wfrest_res_co_001.hdr

    However, the output file subj01_001.nii.gz showed wrong
    orientation when viewing in MRIcron, the image looked rotated.
    Could you please help with it?

    Best,
    Xiangyu

    On Mon, Apr 23, 2012 at 4:31 PM, Douglas N Greve
    <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>> wrote:

       Hi Xiangyu, just add  --identity fsaverage  to the surf2vol
       command line
       doug


       On 04/19/2012 05:57 PM, Long wrote:
    > Hi all,
    >
    > I had a question when convert a surface to volume space.
    >
    > First, I converted a volume nifti data to fsaverage:
    >
    > mris_preproc --target fsaverage --hemi lh --iv data.nii
    > bb_register.dat --out data.lh.mgh
    >
    > Then, I want to convert the data.lh.mgh to volume space, I tried
    > mri_surf2vol, however, it needs register.dat. As I
    understood, the
    > data.lh.mgh was already registered to fsaverage surface, so how
       can I
    > get the required register.dat file? Thank you for your
    attention.
    >
    > Best,
    > Xiangyu
    >
    >
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