Hi ZK,
Thanks. It is great news! I would like to report the following.
asegstats2table seems to be acting strangely.
File "/Applications/freesurfer_b6/bin/asegstats2table", line 195
print 'ERROR: subjects are not specified (use --subjects SUBJECTS)'
Even typing asegstats2table --help leads to the same error message. It was not found in a prev dev built or in 5.3.
Thanks.
Also, not sure if it's placebo, but freeview seems to be running quicker now.
Best Wishes,
Elijah
what happens when you run asegstats2table --help
It does not fail for me. I wonder if it is a python version problem
On 11/18/2016 04:01 PM, Elijah Mak wrote:
Hi ZK,
Thanks. It is great news! I would like to report the following.
asegstats2table seems to be acting strangely.
File "/Applications/freesurfer_b6/bin/asegstats2table", line 195
print 'ERROR: subjects are not specified (use --subjects SUBJECTS)'Even typing asegstats2table --help leads to the same error message. It was not found in a prev dev built or in 5.3.
Thanks.
Also, not sure if it's placebo, but freeview seems to be running quicker now.
Best Wishes,
Elijah
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi freesurfer team,
I just ran into this error. I fixed it by switching from python 3.6 to python 2.7.
Does this sound like the right fix? I wonder if it is documented somewhere on the wiki?
Thank you for the great tool! Kx
On 18 November 2016 at 21:14, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
what happens when you run asegstats2table --help
It does not fail for me. I wonder if it is a python version problem
On 11/18/2016 04:01 PM, Elijah Mak wrote:
Hi ZK,
Thanks. It is great news! I would like to report the following.
asegstats2table seems to be acting strangely.
File "/Applications/freesurfer_b6/bin/asegstats2table", line 195
print 'ERROR: subjects are not specified (use --subjects SUBJECTS)'Even typing asegstats2table --help leads to the same error message. It was not found in a prev dev built or in 5.3.
Thanks.
Also, not sure if it's placebo, but freeview seems to be running quicker now.
Best Wishes,
Elijah
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
hi kirstie,
this makes python 2 a requirement for freesurfer as distributed. i've started a PR that should at least help broaden the requirement to support python 2 and 3.
https://github.com/freesurfer/freesurfer/pull/112
cheers,
satra
On Thu, Aug 3, 2017 at 3:41 AM, Kirstie Whitaker kw401@cam.ac.uk wrote:
Hi freesurfer team,
I just ran into this error. I fixed it by switching from python 3.6 to python 2.7.
Does this sound like the right fix? I wonder if it is documented somewhere on the wiki?
Thank you for the great tool! Kx
On 18 November 2016 at 21:14, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
what happens when you run asegstats2table --help
It does not fail for me. I wonder if it is a python version problem
On 11/18/2016 04:01 PM, Elijah Mak wrote:
Hi ZK,
Thanks. It is great news! I would like to report the following.
asegstats2table seems to be acting strangely.
File "/Applications/freesurfer_b6/bin/asegstats2table", line 195
print 'ERROR: subjects are not specified (use --subjects SUBJECTS)'Even typing asegstats2table --help leads to the same error message. It was not found in a prev dev built or in 5.3.
Thanks.
Also, not sure if it's placebo, but freeview seems to be running quicker now.
Best Wishes,
Elijah
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Kirstie Whitaker, PhD Mozilla Fellow for Science https://science.mozilla.org/programs/fellowships
Postdoctoral researcher Department of Psychiatry University of Cambridge
*Mailing Address* Brain Mapping Unit Department of Psychiatry Sir William Hardy Building Downing Street Cambridge CB2 3EB
*Phone: *+44 7583 535 307 <+44%207583%20535307> *Website:* www.kirstiewhitaker.com *Twitter:* @kirstie_j https://twitter.com/kirstie_j
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu