Dear Freesurfer users
Is there a similar function like asegstats2table or aparcstats2table in order to read out wmparc.stats?
Thanks Best regards Juergen Haenggi
----------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) -----------------------------------------------------------
you can use asegstats2table passing it --statsfile wmparc.stats
doug
Juergen Haenggi wrote:
Dear Freesurfer users
Is there a similar function like asegstats2table or aparcstats2table in order to read out wmparc.stats?
Thanks Best regards Juergen Haenggi
Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi@psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi all, I am using make_average_subject to generate average subjects for two groups in a study. The average subjects' surfaces are created with no errors. However, I am curious why I cannot get the thickness file generated to appear on the surface. After I have the inflated average surface open, when I try to load lh.avg_thickness I get the following error:
% ERROR: number of vertices in /space/troy/5/users/MEGfiles/MEGdata_raw_st im14fix/allsubavg/surf/lh.avg_thickness does not match surface (136768,163 842)surfer: error reading curvature file
Am I just trying to load this incorrectly, or could there be some other reason why the thickness file will not load on an average subject? Thanks in advance, Cameron
which version are you using? This was a problem with 3.X but should be fixed with 4
Cameron Ellis wrote:
Hi all, I am using make_average_subject to generate average subjects for two groups in a study. The average subjects' surfaces are created with no errors. However, I am curious why I cannot get the thickness file generated to appear on the surface. After I have the inflated average surface open, when I try to load lh.avg_thickness I get the following error:
% ERROR: number of vertices in /space/troy/5/users/MEGfiles/MEGdata_raw_st im14fix/allsubavg/surf/lh.avg_thickness does not match surface (136768,163 842)surfer: error reading curvature file
Am I just trying to load this incorrectly, or could there be some other reason why the thickness file will not load on an average subject? Thanks in advance, Cameron
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Cameron Ellis -
Doug Greve -
Juergen Haenggi