You can use mri_label2label specifying your subject as the source and fsaverage as the target and --regmethod volume. This will convert the coordinates to mni305 space. You can then use read_label.m to load the label into matlab

On 09/19/2014 09:32 AM, ri wrote:

Hi all I was wondering whether it’s possible to get the talairach coordinates associated with each label in the segmentation. I would like to use Freesurfer’s segmentation for analysis in Matlab.How to create a text file with the talairach coordinates of each label (or of a specific label, by label number), Thanks

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