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Hi FreeSurfer experts, I want to converts a cortical stats file into a table by the aparcstats2table command. However, there are totally 500 subjects. And it is really hard to input subject numbers one by one. The Numbers are arranged in a regular way. So, can you give me some advices? Thanks a lot. Cheers, Chen
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Hi,
I use the attached script to utilize aparcstats2table. This will generate surface, thickness, thickness_SD, and volume csv files. Hope this helps.
Kiyotaka
External Email - Use Caution
Hi FreeSurfer experts, I want to converts a cortical stats file into a table by the aparcstats2table command. However, there are totally 500 subjects. And it is really hard to input subject numbers one by one. The Numbers are arranged in a regular way. So, can you give me some advices? Thanks a lot. Cheers, Chen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
You can create a file called SUBJECTSFILE with all your subjects in it, then run aparcstats2table with the following option --subjectsfile=SUBJECTSFILE
On 10/3/2019 11:07 AM, chen wrote:
External Email - Use Caution
Hi FreeSurfer experts, I want to converts a cortical stats file into a table by the aparcstats2table command. However, there are totally 500 subjects. And it is really hard to input subject numbers one by one. The Numbers are arranged in a regular way. So, can you give me some advices? Thanks a lot. Cheers, Chen
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freesurfer@nmr.mgh.harvard.edu
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chen -
Greve, Douglas N.,Ph.D. -
Kiyotaka Nemoto