Hi Chacko,

not exactly sure what you mean. Our cortical template is intrinsically surface based and has nothing to do with MNI (although we do compute an MNI "talairach" transform as part of recon-all).

cheers, Bruce On Wed, 19 Jul 2006, Chacko Cherian wrote:

Hello everyone,

I would like to run a group-specific template on Freesurfer and compare my results with the default template(which is MNI,I assume)? Is this possible?Can I do cortical thickness measurement also in the same way?

Thanks in advance,

Chacko.

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