Hi Diana,

you can use mris_anatomical_stats for this.

cheers, Bruce On Thu, 29 Jan 2009, Diana Wotruba wrote:

Dear FS experts

I divided the fsaverage parcellations (aparc.a2005s) into about 1000 smaller parcellations, using mri_divide_parcellation.

What would be the easiest way to get the cortical thickness in these areas for each subject?

Is it reasonable to copy the new .annot file from fsaverage into each subjects label folder ensuing mris_anatomical_stats?

Any help would be appreciated Regards Diana _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer