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Dear all, I am studying transcranial magnetic stimulation (TMS) and would like to nicely visualize my TMS induced electric fields over a pial surface, preferably using Freesurfer to stay in line with my other images. I have a .nii file of the electric field distribution, registered to T1, representing field strengths in every voxel. Visualization in freeview looks okay, but visualization using tksurfer does not really give the right results (most of the brain is yellow... no field distribution visible). I guess something goes wrong in the setting of the colorbar. Preferably I would like to see the field strengths (min:max) in a blue-red colorscheme. Can anybody tell me how to accomplish this? Thank you very much in advance. Best, Debby
Hi Debby
you need to give us a lot more information. What commands did you use to sample the field onto the surface? What was the output of those commands? Note that tksurfer is deprecated, so I wouldn't worry about how it looks
cheers Bruce
On Sat, 15 Sep 2018, Meusen - Klooster, D.C.W. wrote:
External Email - Use Caution
Dear all, I am studying transcranial magnetic stimulation (TMS) and would like to nicely visualize my TMS induced electric fields over a pial surface, preferably using Freesurfer to stay in line with my other images. I have a .nii file of the electric field distribution, registered to T1, representing field strengths in every voxel. Visualization in freeview looks okay, but visualization using tksurfer does not really give the right results (most of the brain is yellow... no field distribution visible). I guess something goes wrong in the setting of the colorbar. Preferably I would like to see the field strengths (min:max) in a blue-red colorscheme. Can anybody tell me how to accomplish this? Thank you very much in advance. Best, Debby
freesurfer@nmr.mgh.harvard.edu