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Hello Andrew Thank you so much for the reply. Your solution worked perfectly. Thank you again

Bests Hossein

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On Wed, Apr 1, 2020 at 8:20 PM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:

Hi Hossein,

The > that you’re including in front of your commands is not supposed to be there. The verbatim commands should be:

export FREESURFER_HOME=/Applications/freesurfer

source $FREESURFER_HOME/SetUpFreeSurfer.sh

best

Andrew

*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Hossein Shooli h.shooly@gmail.com *Reply-To: *FS Help freesurfer@nmr.mgh.harvard.edu *Date: *Wednesday, April 1, 2020 at 4:16 AM *To: *FS Help freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Setup & Configuration Error

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Hello FreeSurfer Development Team,

I have just install the FreeSurfer (freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c) on my mac Catalina OS (10.15.2). The installation path was set as default (/Application/freesurfer).

Then, in the Setup & Configuration step I have faced some troubles that I'm in need to fix it. In this step the first line " $> export FREESURFER_HOME=/Applications/freesurfer" works properly. But when I typed the " $> source $FREESURFER_HOME/SetUpFreeSurfer.sh ".

an error occurred as below:

Hosseins-MacBook-Pro:~ dhs$ > export FREESURFER_HOME=/Applications/freesurfer

Hosseins-MacBook-Pro:~ dhs$ > source $FREESURFER_HOME/SetUpFreeSurfer.sh

/Applications/freesurfer/SetUpFreeSurfer.sh: line 14: return: can only `return' from a function or sourced script

/Applications/freesurfer/SetUpFreeSurfer.sh: line 42: /FreeSurferEnv.sh: No such file or directory

Hosseins-MacBook-Pro:~ dhs$

I have done this steps using bash shell but the results was the same as following:

bash-3.2$ chsh -s /bin/sh

Changing shell for dhs.

Password for dhs:

bash-3.2$ > export FREESURFER_HOME=/Applications/freesurfer/

bash-3.2$ > source $FREESURFER_HOME/SetUpFreeSurfer.sh

/Applications/freesurfer//SetUpFreeSurfer.sh: line 14: return: can only `return' from a function or sourced script

/Applications/freesurfer//SetUpFreeSurfer.sh: line 42: /FreeSurferEnv.sh: No such file or directory

bash-3.2$

I have checked the mail archives but there no answer to my problem. Please help me to solve the issue and setup freesurfer successfully.

Bests regard

Hossein

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