Hello, i have been trying to regenerate the surface on one of my subjects but keep having a problem where the terminal is saying there is a missing file name. Do you have any suggestions please?
Kind regards, Michael
bash-4.1$ freesurfer_setup_freeview -------- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer_v6.0.0 FSFAST_HOME /usr/local/freesurfer_v6.0.0/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer_v6.0.0/subjects MNI_DIR /usr/local/freesurfer_v6.0.0/mni FSL_DIR /usr/local/fsl bash-4.1$ cd /projects/pbic1030/Michael/subjects/Subj5/Subj5 bash-4.1$ recon-all -autorecon-pial -s Subj5 if: Missing file name. bash-4.1$
Can you send me your recon-all script to my email address (not to the list). I suspect it has been modified.
On 06/21/2017 02:04 PM, Michael Davies wrote:
Hello, i have been trying to regenerate the surface on one of my subjects but keep having a problem where the terminal is saying there is a missing file name. Do you have any suggestions please?
Kind regards, Michael
bash-4.1$ freesurfer_setup_freeview -------- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer_v6.0.0 FSFAST_HOME /usr/local/freesurfer_v6.0.0/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer_v6.0.0/subjects MNI_DIR /usr/local/freesurfer_v6.0.0/mni FSL_DIR /usr/local/fsl bash-4.1$ cd /projects/pbic1030/Michael/subjects/Subj5/Subj5 bash-4.1$ recon-all -autorecon-pial -s Subj5 if: Missing file name. bash-4.1$
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