Hello,
I am currently checking and editing the aseg outputs in my longitudinal data. I was wondering whether Freesurfer offers a report indicating the edits I have made to aseg output.
Thank you, Tamara
It does not, but you could make one easily enough, eg,
cd $SUBJCTS_DIR/subject/mri
fscalc aseg.auto.mgz sub aseg.manual.mgz -o aseg.diff.mgz
mri_binarize --i aseg.diff.mgz --min 0.5 --o aseg.diff.bin.mgz
mri_segstats --i aseg.diff.bin.mgz --accumulate --seg aseg.mgz --ctab-default --sum aseg.diffs.dat
The "mean" column will have the number of edits for that region has. For aseg.mgz you can pass it either the auto or the manual
On 03/13/2017 10:52 AM, Tamara Tavares wrote:
Hello,
I am currently checking and editing the aseg outputs in my longitudinal data. I was wondering whether Freesurfer offers a report indicating the edits I have made to aseg output.
Thank you, Tamara
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