Dear Bruce,

Thank you for your reply. I think I've just discovered the issue. I was using Ubuntu 16.04 and it seems that FS does not work with Ubuntu 16.04. I've just tried with Ubuntu 14.04 and FS is working. I'm now processing one image.

The commands that I use:

recon-all -subjid fsresult -i OAS1_0001_MR1_mpr-1_anon.img recon-all -all -subjid fsresult

Do you know if FS works with Ubuntu 16.04?

Cheers, Vitor

On 25 May 2016 at 17:38, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

HI Vitor

can you send us your command line and full screen output? We definitely support img/hdr, but note that it may not contain enough info to figure out the true anatomical directions (e.g. left from right)

cheers Bruce

On Wed, 25 May 2016, Gouveia, Vítor wrote:

Hello,

...

I've been trying to process a subject from the OASIS database with FreeSurfer 5.3. FS is relative new to me. I'm trying to use recon-all with -all but the format img/hdr does not seem supported. Do you have any ideia what should I do to process these images?

Thank you.

Sincerely, Vitor

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