Hi freesurfer experts: 1\ when I finished the first step of recon-all(-autorecon1), check with tkregister2, do i need to check each slice or I just need to check few key anatomicals (Anterior / posterior commissures, the temporal lobes in the coronal plane, and the midline cut)? I think a lot of work to do so, and difficult to control. Is that necessary to do this for every subject? 2\ when I finished fixing bad output from the talairachs registration, click the SAVE REG button, and I should rerun : recon-all -autoreon1 -subjectid subjectname or next command ?
1. You don't need to check each slice - just a few landmarks and overall alignment.
2. You can go on to the next step, but in general if you rerun we will retain your edits.
cheers Bruce
On Thu, 22 Apr 2010, liyari5018 wrote:
Hi freesurfer experts: 1\ when I finished the first step of recon-all(-autorecon1), check with tkregister2, do i need to check each slice or I just need to check few key anatomicals (Anterior / posterior commissures, the temporal lobes in the coronal plane, and the midline cut)? I think a lot of work to do so, and difficult to control. Is that necessary to do this for every subject? 2\ when I finished fixing bad output from the talairachs registration, click the SAVE REG button, and I should rerun : recon-all -autoreon1 -subjectid subjectname or next command ?
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
liyari5018