Dear Freesurfers,
I'm pre-processing my DTI data with Tracula and i found the following error while running trac-all -prep -c dmrirc_H_P01:
dtifit -k /home/joana/FIU/H_P01/dmri/dwi.nii.gz -m /home/joana/FIU/H_P01/dlabel/diff/aparc+aseg_mask.flt.nii.gz -r /home/joana/FIU/H_P01/dmri/bvecs -b /home/joana/FIU/H_P01/dmri/bvals -o /home/joana/FIU/H_P01/dmri/dtifit *Error: bvecs and bvals don't have the same number of entries* Linux ub029113 2.6.18-164.11.1.el5 #1 SMP Wed Jan 6 13:26:04 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS
Although i saw a previous email reporting the same problem i wasn't able to solve it following that email's instructions...
I think there is something wrong with my bvec file since dmri/bvecs.txt only contains zeros.
I've tried changing bvec.txt columns to three decimals and then to 1, -1 and 0 but nothing seems to work.
I've attached my bvals and bvecs files.
Does anyone have any idea why this is happening?
Many thanks to you all!
Joana
Hi Joana - Can you please send your dmrirc file too?
Thanks, a.y
On Fri, 30 Sep 2011, Joana Braga Pereira wrote:
Dear Freesurfers,
I'm pre-processing my DTI data with Tracula and i found the following error while running trac-all -prep -c dmrirc_H_P01:
dtifit -k /home/joana/FIU/H_P01/dmri/dwi.nii.gz -m /home/joana/FIU/H_P01/dlabel/diff/aparc+aseg_mask.flt.nii.gz -r /home/joana/FIU/H_P01/dmri/bvecs -b /home/joana/FIU/H_P01/dmri/bvals -o /home/joana/FIU/H_P01/dmri/dtifit Error: bvecs and bvals don't have the same number of entries Linux ub029113 2.6.18-164.11.1.el5 #1 SMP Wed Jan 6 13:26:04 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS
Although i saw a previous email reporting the same problem i wasn't able to solve it following that email's instructions...
I think there is something wrong with my bvec file since dmri/bvecs.txt only contains zeros.
I've tried changing bvec.txt columns to three decimals and then to 1, -1 and 0 but nothing seems to work.
I've attached my bvals and bvecs files.
Does anyone have any idea why this is happening?
Many thanks to you all!
Joana
Dear Priti and Anastasia,
Many thanks for your reply!
Priti, i did what you suggested by adding the proposed line to the .tcshrc file and it worked! The process finished without any errors!
Thanks once again for your help!
Joana
2011/9/30 Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu
Hi Joana - Can you please send your dmrirc file too?
Thanks, a.y
On Fri, 30 Sep 2011, Joana Braga Pereira wrote:
Dear Freesurfers,
I'm pre-processing my DTI data with Tracula and i found the following error while running trac-all -prep -c dmrirc_H_P01:
dtifit -k /home/joana/FIU/H_P01/dmri/**dwi.nii.gz -m /home/joana/FIU/H_P01/dlabel/**diff/aparc+aseg_mask.flt.nii.**gz -r /home/joana/FIU/H_P01/dmri/**bvecs -b /home/joana/FIU/H_P01/dmri/**bvals -o /home/joana/FIU/H_P01/dmri/**dtifit Error: bvecs and bvals don't have the same number of entries Linux ub029113 2.6.18-164.11.1.el5 #1 SMP Wed Jan 6 13:26:04 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS
Although i saw a previous email reporting the same problem i wasn't able to solve it following that email's instructions...
I think there is something wrong with my bvec file since dmri/bvecs.txt only contains zeros.
I've tried changing bvec.txt columns to three decimals and then to 1, -1 and 0 but nothing seems to work.
I've attached my bvals and bvecs files.
Does anyone have any idea why this is happening?
Many thanks to you all!
Joana
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Joana
Could you please send me proposed line to the .tcshrc file. You got from Priti and Anastasia.
Best regards
Knut J
On 01. okt. 2011 16:52, Joana Braga Pereira wrote:
Dear Priti and Anastasia,
Many thanks for your reply!
Priti, i did what you suggested by adding the proposed line to the .tcshrc file and it worked! The process finished without any errors!
Thanks once again for your help! Joana
2011/9/30 Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu mailto:ayendiki@nmr.mgh.harvard.edu>
Hi Joana - Can you please send your dmrirc file too? Thanks, a.y On Fri, 30 Sep 2011, Joana Braga Pereira wrote: Dear Freesurfers, I'm pre-processing my DTI data with Tracula and i found the following error while running trac-all -prep -c dmrirc_H_P01: dtifit -k /home/joana/FIU/H_P01/dmri/dwi.nii.gz -m /home/joana/FIU/H_P01/dlabel/diff/aparc+aseg_mask.flt.nii.gz -r /home/joana/FIU/H_P01/dmri/bvecs -b /home/joana/FIU/H_P01/dmri/bvals -o /home/joana/FIU/H_P01/dmri/dtifit Error: bvecs and bvals don't have the same number of entries Linux ub029113 2.6.18-164.11.1.el5 #1 SMP Wed Jan 6 13:26:04 EST 2010 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS Although i saw a previous email reporting the same problem i wasn't able to solve it following that email's instructions... I think there is something wrong with my bvec file since dmri/bvecs.txt only contains zeros. I've tried changing bvec.txt columns to three decimals and then to 1, -1 and 0 but nothing seems to work. I've attached my bvals and bvecs files. Does anyone have any idea why this is happening? Many thanks to you all! Joana The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Knut,
Here it is: setenv LC_ALL en_US
Good luck, Joana
2011/10/1 Knut J Bjuland knutjbj@hotmail.com
Dear Joana
Could you please send me proposed line to the .tcshrc file. You got from Priti and Anastasia.
Best regards
Knut J
On 01. okt. 2011 16:52, Joana Braga Pereira wrote:
Dear Priti and Anastasia,
Many thanks for your reply!
Priti, i did what you suggested by adding the proposed line to the .tcshrc file and it worked! The process finished without any errors!
Thanks once again for your help!
Joana
2011/9/30 Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu
Hi Joana - Can you please send your dmrirc file too?
Thanks, a.y
On Fri, 30 Sep 2011, Joana Braga Pereira wrote:
Dear Freesurfers,
I'm pre-processing my DTI data with Tracula and i found the following error while running trac-all -prep -c dmrirc_H_P01:
dtifit -k /home/joana/FIU/H_P01/dmri/dwi.nii.gz -m /home/joana/FIU/H_P01/dlabel/diff/aparc+aseg_mask.flt.nii.gz -r /home/joana/FIU/H_P01/dmri/bvecs -b /home/joana/FIU/H_P01/dmri/bvals -o /home/joana/FIU/H_P01/dmri/dtifit Error: bvecs and bvals don't have the same number of entries Linux ub029113 2.6.18-164.11.1.el5 #1 SMP Wed Jan 6 13:26:04 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS
Although i saw a previous email reporting the same problem i wasn't able to solve it following that email's instructions...
I think there is something wrong with my bvec file since dmri/bvecs.txt only contains zeros.
I've tried changing bvec.txt columns to three decimals and then to 1, -1 and 0 but nothing seems to work.
I've attached my bvals and bvecs files.
Does anyone have any idea why this is happening?
Many thanks to you all!
Joana
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Anastasia Yendiki -
Joana Braga Pereira -
Knut J Bjuland